Locus 1050

Sequence ID 2L_DroMel_CAF1
Location 2,931,274 – 2,931,394
Length 120
Max. P 0.591041
window1693

overview

Window 3

Location 2,931,274 – 2,931,394
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.14
Mean single sequence MFE -27.20
Consensus MFE -26.47
Energy contribution -26.07
Covariance contribution -0.40
Combinations/Pair 1.07
Mean z-score -1.06
Structure conservation index 0.97
SVM decision value 0.12
SVM RNA-class probability 0.591041
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2931274 120 + 22407834
CGGGCGUAAGCCGCUUAAAUAAUUAGUUAAUUGAUUUCGCUGGCCACUCUGGAAAUUGUGGAAUUAUUUUACGUUUUUCUCCGGUGGUUUUCACGCAAAUUAUCAUAUGUGUAAAAUGCU
..(((....)))((........................(..(((((((..(((((.((((((.....))))))..)))))..)))))))..)(((((.((....)).))))).....)). ( -26.90)
>DroSec_CAF1 48951 119 + 1
CGGGCGUAAGCCGCUUAAAUAAUUAGUUAAUUGAUUUCGCUGGCCACUGUGGAAAUUGUGGAAUUAUUUUACGUUUUU-UCCAGCGGUUUUCACGCAAAUUAUCAUAUGUGUAAAAUUCU
...((((((((((((..((.((...((.((.(((((((((...((.....)).....))))))))).)).))..)).)-)..))))))))..))))........................ ( -27.00)
>DroSim_CAF1 50533 119 + 1
CGGGCGUAAGCCGCUUAAAUAAUUAGUUAAUUGAUUUCGCUGGCCACUCUGGAAAUUGUGGAAUUAUUUUACGUUUUU-UCCAGCGGUUUUCACGCAAAUUAUCAUAUGUGUAAAAUUCU
...((((((((((((..((.((...((.((.(((((((((...((.....)).....))))))))).)).))..)).)-)..))))))))..))))........................ ( -27.00)
>DroEre_CAF1 50639 117 + 1
CGGGCGUAAGCCGCUUAAAUAAUUAGUUAAUUGAUUUCGCUGGCCACUCUGGAAAUUGUGGAAUUAUUUUACGUUUUU---CAGUGGUUUUCACGCAAAUUAUCAUAUGUGUAAAACUCU
..(((....)))(((.....((((((....)))))).....)))..(.(((((((.((((((.....)))))).))))---))).)(((((.(((((.((....)).))))))))))... ( -26.70)
>DroYak_CAF1 50571 117 + 1
CGGGCGUAAGCCGCUUAAAUAAUUAGUUAAUUGAUUUCGCUGGCCGCACUGGAAAUUGUGGAAUUAUUUUACGUUUUU---CAGUGGUUUUCACGCAAAUUAUCAUAUGUGUAAAAUUCU
..(((....)))(((.....((((((....)))))).....)))..(((((((((.((((((.....)))))).))))---)))))(((((.(((((.((....)).))))))))))... ( -28.40)
>consensus
CGGGCGUAAGCCGCUUAAAUAAUUAGUUAAUUGAUUUCGCUGGCCACUCUGGAAAUUGUGGAAUUAUUUUACGUUUUU_UCCAGUGGUUUUCACGCAAAUUAUCAUAUGUGUAAAAUUCU
...((((((((((((..........((.((.(((((((((...((.....)).....))))))))).)).))..........))))))))..))))........................ (-26.47 = -26.07 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:07 2006