Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 366,868 – 366,984 |
Length | 116 |
Max. P | 0.870224 |
Location | 366,868 – 366,984 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 96.21 |
Mean single sequence MFE | -29.56 |
Consensus MFE | -26.52 |
Energy contribution | -27.52 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.44 |
Structure conservation index | 0.90 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.870224 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 366868 116 - 22407834 UGCCGCUAUUAAUUGGACAGCUCACAAGAUUGUUAGCUUCUUAAAUACGGCAAUGAAUGUGGACCACGCUUGGCUGCGUCUAAAAUGCUUAAUUACUUGAAAGCACUCGUCUACAA (((((.((((....(((.((((.(((....))).)))))))..))))))))).....(((((((.((((......))))......(((((..........)))))...))))))). ( -32.40) >DroSec_CAF1 34435 116 - 1 UGCCGCUAUUAAUUGGACAGAUCACAAGAUUGUUAGCUUCUUGAAUACGGCAAUGAAUGUGGACCACGCUUGGCUGCGUCUAAAAUGCUUAAUUACUUGAAAGCACUCGUCUACCA (((((.((((....(((.((...(((....)))...)))))..)))))))))......((((((.((((......))))......(((((..........)))))...)))))).. ( -26.20) >DroSim_CAF1 35068 116 - 1 UGCCGCUAUUAAUUGGACAGAUCACAAGAUUGUUAGCUUCUUGAAUACGGCAAUGAAUGUGGACCACGCUUGGCUGCGUCUAAAAUGCUUAAUUACUUGAAAGCACUCGUCUACAA (((((.((((....(((.((...(((....)))...)))))..))))))))).....(((((((.((((......))))......(((((..........)))))...))))))). ( -28.10) >DroEre_CAF1 40896 116 - 1 UGCCGCUAUUAAUUGGACAGCUCACAAGAUUGUUAGCUUCUUGAAUACGGCAAUGAAUGUGGACCACGCUUGGCUGCGUCUGAAACGCUUAAUUACUUCCAAACACUCGUCUACAA (((((.((((....(((.((((.(((....))).)))))))..))))))))).....(((((((...(.((((..((((.....))))..........)))).)....))))))). ( -29.80) >DroYak_CAF1 35469 116 - 1 UGCCGCUAUUAAUUGGACAGCUCACAAGAUUGUUAGCUUCUUGAAUACGGCAAUGAAUGUGGACCACGCUUGGCUGCGUCUAAAACGCUUAAUUACUUGCAAACACUCGUCUACAC (((((.((((....(((.((((.(((....))).)))))))..))))))))).....(((((((.((((......)))).......((..........))........))))))). ( -31.30) >consensus UGCCGCUAUUAAUUGGACAGCUCACAAGAUUGUUAGCUUCUUGAAUACGGCAAUGAAUGUGGACCACGCUUGGCUGCGUCUAAAAUGCUUAAUUACUUGAAAGCACUCGUCUACAA (((((.((((....(((.((((.(((....))).)))))))..))))))))).....(((((((.((((......)))).......((((..........))))....))))))). (-26.52 = -27.52 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:50 2006