Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,928,298 – 2,928,417 |
Length | 119 |
Max. P | 0.748282 |
Location | 2,928,298 – 2,928,417 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.57 |
Mean single sequence MFE | -26.24 |
Consensus MFE | -22.94 |
Energy contribution | -22.70 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.10 |
Mean z-score | -1.37 |
Structure conservation index | 0.87 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.748282 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2928298 119 + 22407834 CUCAAAAAUCGAUGCCAACUUAAAAAGUUCACUCGCAUAUGCUUCCGGCACACAUUU-UUGCUUUUGGCAGUGGAACUUUUUGGCACUGCUUUCAAUAAGCCGGUGAAUUCAUUGAUAUG .......(((((((.....(((((((((((...(((...((((...((((.......-.))))...))))))))))))))))))((((((((.....))).)))))....)))))))... ( -29.60) >DroSec_CAF1 46058 120 + 1 CUCAAAAAUCGAUGCCAACUUAAAAAGUUCACUCGCAUAUGCUUCCGGCACACAUUUUUUGCUUUUGGCAAUGGAACUUUCUGGCACUGUUUUCAAUAAGCCAGUGAAUUCAUUGAUAUG .......(((((((.........(((((((.....(((.((((...((((.........))))...))))))))))))))(((((..............)))))......)))))))... ( -23.94) >DroSim_CAF1 47665 120 + 1 CUCAAAAAUCGAUGCCAACUUAAAAAGUUCACUCGCAUAUGCUUCCGGCACACAUUUUUUGCUUUUGGCAAUGGAACUUUCUGGCACUGUUUUCAAUAAGCCAGUGAAUUCAUUGAUAUG .......(((((((.........(((((((.....(((.((((...((((.........))))...))))))))))))))(((((..............)))))......)))))))... ( -23.94) >DroEre_CAF1 47636 118 + 1 CUCAAAAAUCGAUGCCAACUUAAAAAGUUCACACGCAUAUGCUUCCGGCACACAUUU-CUGCUUUUGGCAAUGGAACUUU-UGGCACUGCCUUCAAUAAGCCAGUAAAUUCAUUGAUAUG .......(((((((((((......((((((.....(((.((((...((((.......-.))))...))))))))))))))-))))((((.(((....))).))))......))))))... ( -25.50) >DroYak_CAF1 47584 119 + 1 CUCAAAAAUCGAUGCCAACUUAAAAAGUUCACUCGCAUAUGCUUCCGGCACACAUUU-UUGCUUUUGGCAAUGGAACUUUCUGGCACUGCCUUCAAUAAGCCAGCGAAUGCAUUGAUAUG .......((((((((........(((((((.....(((.((((...((((.......-.))))...))))))))))))))(((((..............))))).....))))))))... ( -28.24) >consensus CUCAAAAAUCGAUGCCAACUUAAAAAGUUCACUCGCAUAUGCUUCCGGCACACAUUU_UUGCUUUUGGCAAUGGAACUUUCUGGCACUGCUUUCAAUAAGCCAGUGAAUUCAUUGAUAUG .......(((((((.........(((((((.....(((.((((...((((.........))))...))))))))))))))(((((..............)))))......)))))))... (-22.94 = -22.70 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:00 2006