Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,927,754 – 2,927,871 |
Length | 117 |
Max. P | 0.997347 |
Location | 2,927,754 – 2,927,871 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 86.67 |
Mean single sequence MFE | -29.56 |
Consensus MFE | -24.93 |
Energy contribution | -25.18 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.07 |
Mean z-score | -2.76 |
Structure conservation index | 0.84 |
SVM decision value | 2.84 |
SVM RNA-class probability | 0.997347 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2927754 117 + 22407834 CGUAUACGCAGUGGAGUUUCAACUGCACUUUAGACAUUUUGAUAAUUGCUUCAGAGUAAUGUUUUUCUUGUUGCUAGCUUAACUGCUCGACAGGGUCAACAUGUCAUACUAAUUUUA .((((..(((((.(.....).)))))......(((((.(((((.((((((....))))))......(((((((..(((......))))))))))))))).)))))))))........ ( -32.90) >DroSec_CAF1 45573 89 + 1 ----------------------------UUUAGACAUUUUGAUAAUUGCUUCGGCGUAAUGUUUUUCCUGUUGCUAGCUUAACUGCUCGACAGGGUCAACAUGUCAUACUAAUUUUA ----------------------------....(((((.(((((....((....))...........(((((((..(((......))))))))))))))).)))))............ ( -27.70) >DroSim_CAF1 47125 117 + 1 CGUAUACGCAGUGGAGUUUCAACUGCACUUUAGACAUUUUGAUAAUUGCUUCGGAGUAAUGUUUUUCUUGUUGCUAGCUUAACUGCUCGACAGGGUCAACAUGUCAUACUAAUUUUA .((((..(((((.(.....).)))))......(((((.(((((.((((((....))))))......(((((((..(((......))))))))))))))).)))))))))........ ( -32.90) >DroEre_CAF1 47092 117 + 1 CGUAUACGCAGUGGAGUUCCAACUGCACUUUAGACAUUUUGAUAAUUGCUUCACAGUAAUGUUUUUCUUGUUGCUAGCUUAACUCCUCGGCAGGGUCAACAUGUCAUCCUAAUUUUA .......(((((((....)).)))))......(((((.(((((.((((((....))))))......(((((((..((.....))...)))))))))))).)))))............ ( -28.50) >DroYak_CAF1 47044 117 + 1 CGUAUACGCAGUGGAGCUUCAACUGCACUUUAGACAUUUUGAUAAUUGCUUCACAGUAAUGUUUUUCUUGUUGCUAGCUUAACUCCUCGGCAGGGUCAACAUGUCAUCCUAAUUUUA .......(((((.(.....).)))))......(((((.(((((.((((((....))))))......(((((((..((.....))...)))))))))))).)))))............ ( -25.80) >consensus CGUAUACGCAGUGGAGUUUCAACUGCACUUUAGACAUUUUGAUAAUUGCUUCAGAGUAAUGUUUUUCUUGUUGCUAGCUUAACUGCUCGACAGGGUCAACAUGUCAUACUAAUUUUA .......(((((.........)))))......(((((.(((((.(((((......)))))......(((((((..(((......))))))))))))))).)))))............ (-24.93 = -25.18 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:59 2006