Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,925,266 – 2,925,378 |
Length | 112 |
Max. P | 0.626723 |
Location | 2,925,266 – 2,925,378 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.17 |
Mean single sequence MFE | -21.14 |
Consensus MFE | -19.05 |
Energy contribution | -19.45 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.35 |
Structure conservation index | 0.90 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.626723 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2925266 112 - 22407834 UAACAUUGCAAAUAGUCAACUCAUCAGGCCCUUAGAAAGGAUGCCCUUCCAUCUCGCUCCGGCCUGAAUGCUCUCUCUCUCCCU--------CCUUCUUUCGCCGGCUAUUGUUUAAAAA .......((((.(((((......(((((((...((...(((((......)))))..))..)))))))..((.............--------.........)).)))))))))....... ( -23.05) >DroSec_CAF1 43411 112 - 1 UAACAUUGCAAAUAGUCAACUCAUCAGGCCCUUAGAAAGGAUACUAUUCCAUCUCGCUCUGGCCAGAAUGCUCUCUAUCUCUCU--------CUCCCUUUCGCCGGCUAUUGUUUAAAAA .......((((.(((((.........((((....((..(((......)))...)).....))))(((......)))........--------............)))))))))....... ( -18.40) >DroSim_CAF1 44268 108 - 1 UAACAUUGCAAAUAGUCAACUCAUCAGGCCCUUAGAAAGGAUACUAUUCCAUCUCGCUCUGGCCUGAAUGCUCUCUAUCUCUCU--------C----UUUCGCCGGCUAUUGUUUAAAAA .......((((.(((((......(((((((....((..(((......)))...)).....)))))))..((.............--------.----....)).)))))))))....... ( -22.07) >DroEre_CAF1 44402 120 - 1 UAACAUUGCAAAUAGUCAACUCAUCAGGCCCUUAGAAAGGAUACCAUUCCAUCUCGCUCUGGCCUGAAUGCUCUCUCUCUCUCCCUGUCUCGCACUCUUUCGCCGGCUAUUGUUUAAAAA .......((((.(((((......(((((((....((..(((......)))...)).....)))))))........................((........)).)))))))))....... ( -24.00) >DroYak_CAF1 44485 108 - 1 UAGCAUUGCAAAUAGUCAACUCAUCAGACCCUUAGAAAGGAUAUCAUUCCAUCUCGCUCUGGCCUGAAUGCUCUCUCU------------CGCUCUCUUUUGCCGGCUAUUGUUUAAAAA ((((...(((((...........((((.((....((..(((......)))...)).....)).))))..((.......------------.)).....)))))..))))........... ( -18.20) >consensus UAACAUUGCAAAUAGUCAACUCAUCAGGCCCUUAGAAAGGAUACCAUUCCAUCUCGCUCUGGCCUGAAUGCUCUCUCUCUCUCU________CUCUCUUUCGCCGGCUAUUGUUUAAAAA .......((((.(((((......(((((((....((..(((......)))...)).....)))))))..((..............................)).)))))))))....... (-19.05 = -19.45 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:52 2006