| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,924,444 – 2,924,559 |
| Length | 115 |
| Max. P | 0.834593 |
| Location | 2,924,444 – 2,924,559 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 95.94 |
| Mean single sequence MFE | -33.03 |
| Consensus MFE | -28.17 |
| Energy contribution | -29.50 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.701259 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2924444 115 + 22407834 AGAAAGAAACAACGAGAAAAGUUGACAAACCGCGUCAAACUCAUUCGAUUGUCGCUGAAGAGAGAAUUGUGUGAGAAUGCCUCGGCUUGUUUCAUUUUUCCUGCUUGUUUUUUUA ..((((((((((((.(((((((.(((((.(((.(.((..(((((.(((((.((........)).))))).)))))..)).).))).)))))..))))))).)).)))))))))). ( -35.60) >DroSim_CAF1 43471 115 + 1 AGAAAGAAACAGCGAGAAAAGUUGACAAACCGCGUCAAACCCAUUCGAUUGUCGCUGAAGAGAGAAUUGUGUGAGAAUGCCUCGGCUUGUUUCAUUUUUCCUGCUUGUUUUUUUA ..((((((((((((.(((((((.(((((.(((.(.((..(.(((.(((((.((........)).))))).))).)..)).).))).)))))..))))))).))).))))))))). ( -33.20) >DroYak_CAF1 43656 111 + 1 ---AAGAAACAGCGAGAAAAGUUGACAAACCGCGUCAAACCCAUUCGAUUGUCGCUGAAGAGAGAAUUGUGUGAGAAUGCCUCGGCUUGUUUCAGUUUUCCUGCUUGUUUU-UUA ---(((((((((((.(((((.(.(((((.(((.(.((..(.(((.(((((.((........)).))))).))).)..)).).))).)))))..).))))).))).))))))-)). ( -30.30) >consensus AGAAAGAAACAGCGAGAAAAGUUGACAAACCGCGUCAAACCCAUUCGAUUGUCGCUGAAGAGAGAAUUGUGUGAGAAUGCCUCGGCUUGUUUCAUUUUUCCUGCUUGUUUUUUUA ..((((((((((((.(((((((.(((((.(((.(.((..(.(((.(((((.((........)).))))).))).)..)).).))).)))))..))))))).))).))))))))). (-28.17 = -29.50 + 1.33)
| Location | 2,924,444 – 2,924,559 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 95.94 |
| Mean single sequence MFE | -26.93 |
| Consensus MFE | -27.34 |
| Energy contribution | -26.90 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.65 |
| Structure conservation index | 1.02 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.834593 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2924444 115 - 22407834 UAAAAAAACAAGCAGGAAAAAUGAAACAAGCCGAGGCAUUCUCACACAAUUCUCUCUUCAGCGACAAUCGAAUGAGUUUGACGCGGUUUGUCAACUUUUCUCGUUGUUUCUUUCU .....((((((..((((((..(((..(((((((...((..((((..(.(((.((.(....).)).))).)..))))..))...))))))))))..))))))..))))))...... ( -26.00) >DroSim_CAF1 43471 115 - 1 UAAAAAAACAAGCAGGAAAAAUGAAACAAGCCGAGGCAUUCUCACACAAUUCUCUCUUCAGCGACAAUCGAAUGGGUUUGACGCGGUUUGUCAACUUUUCUCGCUGUUUCUUUCU .....(((((.((..(((((.(...((((((((...((..((((..(.(((.((.(....).)).))).)..))))..))...))))))))..).)))))..)))))))...... ( -27.40) >DroYak_CAF1 43656 111 - 1 UAA-AAAACAAGCAGGAAAACUGAAACAAGCCGAGGCAUUCUCACACAAUUCUCUCUUCAGCGACAAUCGAAUGGGUUUGACGCGGUUUGUCAACUUUUCUCGCUGUUUCUU--- ...-.(((((.((..(((((.(...((((((((...((..((((..(.(((.((.(....).)).))).)..))))..))...))))))))..).)))))..)))))))...--- ( -27.40) >consensus UAAAAAAACAAGCAGGAAAAAUGAAACAAGCCGAGGCAUUCUCACACAAUUCUCUCUUCAGCGACAAUCGAAUGGGUUUGACGCGGUUUGUCAACUUUUCUCGCUGUUUCUUUCU .....(((((.((..(((((.(...((((((((...((..((((..(.(((.((.(....).)).))).)..))))..))...))))))))..).)))))..)))))))...... (-27.34 = -26.90 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:48 2006