Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 358,375 – 358,465 |
Length | 90 |
Max. P | 0.742248 |
Location | 358,375 – 358,465 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 90.89 |
Mean single sequence MFE | -20.28 |
Consensus MFE | -16.45 |
Energy contribution | -18.07 |
Covariance contribution | 1.61 |
Combinations/Pair | 1.04 |
Mean z-score | -2.36 |
Structure conservation index | 0.81 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.742248 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 358375 90 + 22407834 UCUGGACAUGCGUUUCCUGACCCCCUCACUGGUCGGGACAUAAAUUUAUUUUUAAUUUACUUAUGCGCGAAUUUCCGAUCUCUGCCCUGC ..((((..(((((.((((((((........))))))))..((((((.......)))))).....)))))....))))............. ( -20.80) >DroSec_CAF1 32363 90 + 1 UCUGGACAUUCGUUUCCUGACCCCCUCACUGGUCGGGACAUAAAUUUAUUUUUAAUUUACUUAUGCGCGAAUUUCCGAUCUCUGCCCUGC ..((((.((((((.((((((((........))))))))..((((((.......)))))).......)))))).))))............. ( -23.20) >DroSim_CAF1 32610 90 + 1 UCUGGACAUUCGUUUCCUGACCCCCUCACUGGUCGGGACAUAAAUUUAUUUUUAAUUUACUUAUGCGCGAAUUUCCGAUCUCUGCCCUGC ..((((.((((((.((((((((........))))))))..((((((.......)))))).......)))))).))))............. ( -23.20) >DroEre_CAF1 38800 89 + 1 UCUGGACAUUCGUUUCCUGACC-CCUCACUGGUCGGGACAUAAAUUUAUUUUUAAUUUACUUAUGCGCGAAUUUCCGAUUUCUGCCCUGC ..((((.((((((.((((((((-.......))))))))..((((((.......)))))).......)))))).))))............. ( -22.90) >DroYak_CAF1 33299 90 + 1 UCUGGACAUUCGUUUCCUGACCCCCUCACUGGCCGGGACAUAAAUUUAUUUUUAAUUUACUUAUGCGCGAAUUUCCGAUCUCUGCCCUGC ..((((.((((((.(((((.((........)).)))))..((((((.......)))))).......)))))).))))............. ( -18.20) >DroAna_CAF1 43317 78 + 1 GCUCUA---UCGCUUC---GCCUCCGAAC------GGACAUAAAUUUAUUUUUAAUUUACUUAUGCGCGAAUUUCCGAGCUCUGCCCUGC ((((..---....(((---((.(((....------)))..((((((.......)))))).......))))).....)))).......... ( -13.40) >consensus UCUGGACAUUCGUUUCCUGACCCCCUCACUGGUCGGGACAUAAAUUUAUUUUUAAUUUACUUAUGCGCGAAUUUCCGAUCUCUGCCCUGC ..((((.((((((.((((((((........))))))))..((((((.......)))))).......)))))).))))............. (-16.45 = -18.07 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:48 2006