Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,922,233 – 2,922,352 |
Length | 119 |
Max. P | 0.997473 |
Location | 2,922,233 – 2,922,352 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.82 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -24.24 |
Energy contribution | -23.88 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.10 |
Mean z-score | -2.35 |
Structure conservation index | 0.89 |
SVM decision value | 2.87 |
SVM RNA-class probability | 0.997473 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2922233 119 + 22407834 AACCCACUGUUGCC-CCUCAGUUGCCGCAUGCAAUGUGAUUUAUAUUACUCAUUUGGCAGCUAAUUACAAAUGCCGAGCUAAUAAAUUUAAGUAUAUUAAGUGCAUUGGCAACAACAAAU .......(((((((-....((((((((.(((....(((((....))))).))).)))))))).......(((((...(((((((.((....)).)))).)))))))))))))))...... ( -30.60) >DroSec_CAF1 40498 119 + 1 AACCCACUGUUGCC-CCUCAGUUGCCGCAUGCAAUGCGAUUUAUAUUACUCAUUUGGCAGCUAAUUACAAAUGCCGAGCUAAUAAAUUUAAGUAUAUUAAGUGCAUUGGCAACAACAAAU .......(((((((-....(((((((((((...))))((..........))....))))))).......(((((...(((((((.((....)).)))).)))))))))))))))...... ( -27.20) >DroSim_CAF1 41344 119 + 1 AACCCACUGUUGCC-CCUCAGUUGCCGCAUGCAAUGCGAUUUAUAUUACUCAUUUGGCAGCUAAUUACAAAUGCCGAGCUAAUAAAUUUAAGUAUAUUAAGUGCAUUGGCAACAACAAAU .......(((((((-....(((((((((((...))))((..........))....))))))).......(((((...(((((((.((....)).)))).)))))))))))))))...... ( -27.20) >DroEre_CAF1 41364 120 + 1 AACCCACUGUUGCCCCCUCGGUUGCCACAUGCAAUGCGAUUUAUAUUACUCAUUUGGCAGCUAAUUACAAAUGCCGAGCUAAUAAAUUUAAGUAUAUUAAGUGCAUUGGCUACAACGAAU .......(((((.......((((((((.(((....(..((....))..).))).))))))))..............(((((((..((((((.....))))))..))))))).)))))... ( -26.10) >DroYak_CAF1 41435 119 + 1 AACCCACUGUUGUC-CCUCACUUGCCACAUGCAGUGCGAUUUAUAUUACUCAUUUGGCAGCUAAUUACAAAUGCCGAGCUAAUAAAUUUAAGUAUAUUAAGUGCAUUGGCAACAACAAAU .......((((((.-......((((((.(((.((((..........))))))).))))))...........((((((((......((((((.....)))))))).))))))))))))... ( -25.40) >consensus AACCCACUGUUGCC_CCUCAGUUGCCGCAUGCAAUGCGAUUUAUAUUACUCAUUUGGCAGCUAAUUACAAAUGCCGAGCUAAUAAAUUUAAGUAUAUUAAGUGCAUUGGCAACAACAAAU .......(((((.......((((((((.(((....(..((....))..).))).))))))))...............((((((..((((((.....))))))..))))))..)))))... (-24.24 = -23.88 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:44 2006