Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,920,675 – 2,920,767 |
Length | 92 |
Max. P | 0.500000 |
Location | 2,920,675 – 2,920,767 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 96.71 |
Mean single sequence MFE | -10.19 |
Consensus MFE | -9.69 |
Energy contribution | -9.89 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.07 |
Structure conservation index | 0.95 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2920675 92 - 22407834 AUUAAAAGUAAUUUGCAUUGCAAAUUAAUUUUCUGCUCCUUUUUUUUCGGCCUCCCCUCUUUUCUGCGCUGUCAAAAUUACUAUUUUAUUUG ......(((((((((((.((((............(((...........))).............)))).)))..)))))))).......... ( -10.21) >DroSec_CAF1 38970 91 - 1 AUUAAAAGUAAUUUGCAUUGCAAAUUAAUUUUCUGCUCCUUU-UUUUCGGCCUCCCCUCUUUUCCGCGCUGUCAAAAUUACUAUUUUAUUUG ......(((((((((((.(((.............(((.....-.....)))..............))).)))..)))))))).......... ( -8.83) >DroSim_CAF1 39802 90 - 1 AUUAAAAGUAAUUUGCAUUGCAAAUUAAUUUUCAGCUCCUUU--UUUCGGCCUCCCCUCUUUUCUGCGCUGUCAAAAUUACUAUUUUAUUUG ......(((((((((((.((((............(((.....--....))).............)))).)))..)))))))).......... ( -10.41) >DroEre_CAF1 39888 90 - 1 AUUAAAAGUAAUUUGCAUUGCAAAUUAAUUUUCUGCUCCUUU--UUUCGGCUUCCCCUCUUCUCUGCGCUGUCAAAAUUACUAUUUUAUUUG ......(((((((((((.((((............(((.....--....))).............)))).)))..)))))))).......... ( -11.11) >DroYak_CAF1 39925 90 - 1 AUUAAAAGUAAUUUGCAUUGCAAAUUAAUUUUCUGCUCCUUU--UUUCGGCCUCCCUUCUUUUCUGCGCUGUCAAAAUUACUAUUUUAUUUG ......(((((((((((.((((............(((.....--....))).............)))).)))..)))))))).......... ( -10.41) >consensus AUUAAAAGUAAUUUGCAUUGCAAAUUAAUUUUCUGCUCCUUU__UUUCGGCCUCCCCUCUUUUCUGCGCUGUCAAAAUUACUAUUUUAUUUG ......(((((((((((.((((............(((...........))).............)))).)))..)))))))).......... ( -9.69 = -9.89 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:41 2006