Locus 1036

Sequence ID 2L_DroMel_CAF1
Location 2,920,326 – 2,920,432
Length 106
Max. P 0.563071
window1665

overview

Window 5

Location 2,920,326 – 2,920,432
Length 106
Sequences 3
Columns 106
Reading direction forward
Mean pairwise identity 81.25
Mean single sequence MFE -21.43
Consensus MFE -13.25
Energy contribution -13.81
Covariance contribution 0.56
Combinations/Pair 1.15
Mean z-score -1.91
Structure conservation index 0.62
SVM decision value 0.06
SVM RNA-class probability 0.563071
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2920326 106 + 22407834
AACUGCAUAUUCCCAUUUCCUACAGUAUGUUGCUACUCUGGCAACUCUGCAUCAUUUAGAUGGCAACACCUUAUAAAAGGUGGCAACACAUAAUUAUUGGAAGAAU
...............(((((..(((...((((((.....)))))).)))((((.....))))((..((((((....))))))))..............)))))... ( -24.20)
>DroSec_CAF1 38569 92 + 1
AACUCCAUAUUUCCAUUUCCUACACUGUGUUGCAA--------ACCCU-----AUUUAGAUGGCAACACCCUAUGAAAGGUGGCAACACCG-UUUAUUGGAAGAAU
.........((((((...........(((((((..--------...((-----....))...)))))))...(((((.((((....)))).-)))))))))))... ( -24.00)
>DroSim_CAF1 39401 92 + 1
AACUCCAUAUUUCCAUUUCCUACAGUGUGUUGCAA--------ACCCU-----GUUUAGAUGGCAACACCCUAUGAAAGGUGGCAACCCGU-UUUAUUGCAAGAAU
............((((((...((((.((.......--------)).))-----))..))))))...((((........))))((((.....-....))))...... ( -16.10)
>consensus
AACUCCAUAUUUCCAUUUCCUACAGUGUGUUGCAA________ACCCU_____AUUUAGAUGGCAACACCCUAUGAAAGGUGGCAACACAU_UUUAUUGGAAGAAU
...............(((((....(((((((((............((..............))...((((........))))))))))))).......)))))... (-13.25 = -13.81 +   0.56) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:40 2006