Locus 1035

Sequence ID 2L_DroMel_CAF1
Location 2,919,419 – 2,919,539
Length 120
Max. P 0.592423
window1664

overview

Window 4

Location 2,919,419 – 2,919,539
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.30
Mean single sequence MFE -28.52
Consensus MFE -23.34
Energy contribution -23.10
Covariance contribution -0.24
Combinations/Pair 1.12
Mean z-score -1.42
Structure conservation index 0.82
SVM decision value 0.12
SVM RNA-class probability 0.592423
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2919419 120 + 22407834
AAAAAUAGCUCAAAACAUUUUUAUAUGCCGGCCGAAAAAUGCAAACACUUCAAUUUUCGUUCGGAAGUGGGCUAAAUUGGGUGGUGUUGGCAAAAACACUACGUACAUAGUUGCAAUUUG
.....(((((((...(((......)))(((..((((((.((.((....)))).))))))..)))...)))))))...((.((((((((......)))))))).))............... ( -30.20)
>DroSec_CAF1 37816 119 + 1
AAAAAUAGCUCAAAACAUUUUUAUAUGCCGGCCGAAAAAUGCAAACACUUCAAUUUGCGUUCGGAAGUGGGCUAAAUUGGGUGGUGUUGGCAA-AACACUCUGUACAUGGUUGCAAUUUG
.....(((((((...(((......))).(..((((...(((((((........)))))))))))..))))))))....(((((.((....)).-..)))))((((......))))..... ( -25.80)
>DroSim_CAF1 38533 119 + 1
AAAAAUAGCUCAAAACAUUUUUAUAUGCCGGCCGAAAAAUGCAAACACUUCAAUUUGCGUUCGGAAGUGGGCUAAAUUGGGUGGUGUUGGCAA-AACACUAUGUACAUGGUUGCAAUUUG
.....(((((((...(((......))).(..((((...(((((((........)))))))))))..))))))))...((.((((((((.....-)))))))).))............... ( -27.70)
>DroEre_CAF1 38562 115 + 1
AAAAAUAGCUCAAAACAUUUUUAUAUGCCGGCCAAAAAAUGCAAACACUUCAAUUUGCGUUCUGAAGUGGGCUAAAUUGGGUGGUGUUGGUAA-AACACUACG----UAGCUGCAAUUUG
.....((((((...............(((.((.....((((((((........)))))))).....)).)))........((((((((.....-)))))))))----.)))))....... ( -28.80)
>DroYak_CAF1 38770 116 + 1
AAAAAUAGCUCAAAACAUUUUUAUAUGCCGGCCAAAAAAUGCAAACACUUCAAUUUGCGUUCGGAAGUGGGCUAAAUUGGGUGGUGUUGGCAAAAACACUACG----UAGUUGCAAUUUG
.....(((((((...(((......)))((((.......(((((((........)))))))))))...)))))))(((((.((((((((......)))))))).----)))))........ ( -30.11)
>consensus
AAAAAUAGCUCAAAACAUUUUUAUAUGCCGGCCGAAAAAUGCAAACACUUCAAUUUGCGUUCGGAAGUGGGCUAAAUUGGGUGGUGUUGGCAA_AACACUACGUACAUAGUUGCAAUUUG
.....(((((................(((.((.....((((((((........)))))))).....)).)))........((((((((......))))))))......)))))....... (-23.34 = -23.10 +  -0.24) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:39 2006