Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,919,419 – 2,919,539 |
Length | 120 |
Max. P | 0.592423 |
Location | 2,919,419 – 2,919,539 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.30 |
Mean single sequence MFE | -28.52 |
Consensus MFE | -23.34 |
Energy contribution | -23.10 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.12 |
Mean z-score | -1.42 |
Structure conservation index | 0.82 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.592423 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2919419 120 + 22407834 AAAAAUAGCUCAAAACAUUUUUAUAUGCCGGCCGAAAAAUGCAAACACUUCAAUUUUCGUUCGGAAGUGGGCUAAAUUGGGUGGUGUUGGCAAAAACACUACGUACAUAGUUGCAAUUUG .....(((((((...(((......)))(((..((((((.((.((....)))).))))))..)))...)))))))...((.((((((((......)))))))).))............... ( -30.20) >DroSec_CAF1 37816 119 + 1 AAAAAUAGCUCAAAACAUUUUUAUAUGCCGGCCGAAAAAUGCAAACACUUCAAUUUGCGUUCGGAAGUGGGCUAAAUUGGGUGGUGUUGGCAA-AACACUCUGUACAUGGUUGCAAUUUG .....(((((((...(((......))).(..((((...(((((((........)))))))))))..))))))))....(((((.((....)).-..)))))((((......))))..... ( -25.80) >DroSim_CAF1 38533 119 + 1 AAAAAUAGCUCAAAACAUUUUUAUAUGCCGGCCGAAAAAUGCAAACACUUCAAUUUGCGUUCGGAAGUGGGCUAAAUUGGGUGGUGUUGGCAA-AACACUAUGUACAUGGUUGCAAUUUG .....(((((((...(((......))).(..((((...(((((((........)))))))))))..))))))))...((.((((((((.....-)))))))).))............... ( -27.70) >DroEre_CAF1 38562 115 + 1 AAAAAUAGCUCAAAACAUUUUUAUAUGCCGGCCAAAAAAUGCAAACACUUCAAUUUGCGUUCUGAAGUGGGCUAAAUUGGGUGGUGUUGGUAA-AACACUACG----UAGCUGCAAUUUG .....((((((...............(((.((.....((((((((........)))))))).....)).)))........((((((((.....-)))))))))----.)))))....... ( -28.80) >DroYak_CAF1 38770 116 + 1 AAAAAUAGCUCAAAACAUUUUUAUAUGCCGGCCAAAAAAUGCAAACACUUCAAUUUGCGUUCGGAAGUGGGCUAAAUUGGGUGGUGUUGGCAAAAACACUACG----UAGUUGCAAUUUG .....(((((((...(((......)))((((.......(((((((........)))))))))))...)))))))(((((.((((((((......)))))))).----)))))........ ( -30.11) >consensus AAAAAUAGCUCAAAACAUUUUUAUAUGCCGGCCGAAAAAUGCAAACACUUCAAUUUGCGUUCGGAAGUGGGCUAAAUUGGGUGGUGUUGGCAA_AACACUACGUACAUAGUUGCAAUUUG .....(((((................(((.((.....((((((((........)))))))).....)).)))........((((((((......))))))))......)))))....... (-23.34 = -23.10 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:39 2006