Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,917,802 – 2,917,909 |
Length | 107 |
Max. P | 0.653477 |
Location | 2,917,802 – 2,917,909 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 65.88 |
Mean single sequence MFE | -16.95 |
Consensus MFE | -3.17 |
Energy contribution | -6.47 |
Covariance contribution | 3.30 |
Combinations/Pair | 1.10 |
Mean z-score | -2.39 |
Structure conservation index | 0.19 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.653477 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2917802 107 - 22407834 UUCUUAAAACAUGAGCAUUAUUUAGGGUGUUUCAAAGUGUGCAACACUACUUUUAUAGAUAUGUAUUUACAUA--------CACCUUAUCACUUUUAAAGAGUGUCUCCAUUUCC ............(((.......(((((((......((((.....))))...........(((((....)))))--------))))))).(((((.....))))).)))....... ( -18.10) >DroSec_CAF1 36217 108 - 1 UUCCUAAAAUAUAAGCAAUCCUUAAGGUGUUUAAAACUAUGCAACACUACU-------AUCUGUAUUUGCAUACUUUGCAACACCUUUUCACUUUUGAAGAGUGUCUCCAUUUCC .......................((((((((..(((.(((((((...(((.-------....))).))))))).)))..))))))))..(((((.....)))))........... ( -21.00) >DroSim_CAF1 36913 108 - 1 UUCUUAAAAUAUAAGCAUUCCUUAAGGUGUUUAAAACUAUGCAACACUACU-------AUCUGUAUUUGCAUACUUUGCAACACCUUUUCACUUUUGAAGAGUGUCUCCAUUUCC ..............((((((...((((((((..(((.(((((((...(((.-------....))).))))))).)))..))))))))((((....)))))))))).......... ( -23.40) >DroEre_CAF1 37070 87 - 1 -UCUCAGCAUACAAAACUAAUC-AA-UU--------CAUGGGAAUACUACAUUUU-AU------AUUUGCAUA----------CCCUUUCAAUUUUGAAGAGUGUUCCCAUUGCC -.....(((.............-..-..--------.(((((((((((...((((-(.------..(((.(..----------....).)))...))))))))))))))))))). ( -14.96) >DroYak_CAF1 37200 94 - 1 -UCUCAACAUACCAAAAUAACU-AAAUU--------AUUUGCAACACUAAAUUUG-AAAUCCGCAUUUGCAUA----------CCUUUUCACUUUUGAAGAGUGUCACCAUUACC -.............((((((..-...))--------))))...(((((.......-......((....))...----------...(((((....)))))))))).......... ( -7.30) >consensus UUCUUAAAAUAUAAGCAUUACUUAAGGUGUUU_AAACUAUGCAACACUACUUUU__A_AUCUGUAUUUGCAUA________CACCUUUUCACUUUUGAAGAGUGUCUCCAUUUCC .......................((((((((......(((((((......................)))))))......))))))))..(((((.....)))))........... ( -3.17 = -6.47 + 3.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:38 2006