Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,917,511 – 2,917,631 |
Length | 120 |
Max. P | 0.757374 |
Location | 2,917,511 – 2,917,631 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.04 |
Mean single sequence MFE | -19.33 |
Consensus MFE | -16.18 |
Energy contribution | -16.50 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.09 |
Mean z-score | -1.53 |
Structure conservation index | 0.84 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757374 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2917511 120 - 22407834 AUUGUAGAACGUGAAAAAAAACGAAAGAAACAAUCUAGGUGCAAAAUAGAAAGCAGAAUAACGAGAAAUGCAAGGCAGCGGAAAGAAAAAUCUUGAUUUUAGCUUUGCAGCUCUCAAACA .((((....(((........)))..........((((.........))))..))))......((((..((((((((......((((....)))).......))))))))..))))..... ( -24.12) >DroSec_CAF1 35923 120 - 1 AUUGUAGAACGUGAAAAAAAAAGAAAGAAACAAUCUAGGUGCAAAAUAGAAAGCAGAAUAACGAGAAAUGCAAGGCAGCGUAAAGAAAAAUCUUGAUUUUAGCUUUGCAACACUCAAACA ..(.((((..((.................))..)))).)(((..........))).......(((...((((((((......((((....)))).......))))))))...)))..... ( -17.25) >DroSim_CAF1 36620 115 - 1 AUUGUAGAACGUGAA-----AAGAAAGAAACAAUCUAGGUGCAAAAUAGAAAGCAGAAUAACGAGAAAUGCAAGGCAGCGUAAAGAAAAAUCUUGAUUUUAGCUUUGCAACACUCAAACA ..(.((((..((...-----.........))..)))).)(((..........))).......(((...((((((((......((((....)))).......))))))))...)))..... ( -17.62) >DroEre_CAF1 36770 118 - 1 AGUGUAAAACGUAAAAGAA--AAGCAGAAACAAUCUAGGUGCAAAAUAGAAAGCAGAAUAACGAGAAAUGCAAGGCAGCGGAAAGAAAAAUCUUGAUUUUAGUUUUGCAGCUCUCAGGCA ...................--..((........((((.........))))............((((..((((((((......((((....)))).......))))))))..))))..)). ( -20.32) >DroYak_CAF1 36904 114 - 1 AUUGUAAACGGG----GAA--AAAAAGAAACAAUCUAGGUGCAAAAUAGAAAGCAGAAUAACGAGAAAUGCAAGGCAGCGGAAAUAAAAAUCUUGAUUUUAGUUCUGCAGCUCUCAAGCA .(((((.....(----((.--............)))...)))))....((.(((..............(((...)))((((((...(((((....)))))..)))))).))).))..... ( -17.32) >consensus AUUGUAGAACGUGAAAAAA_AAGAAAGAAACAAUCUAGGUGCAAAAUAGAAAGCAGAAUAACGAGAAAUGCAAGGCAGCGGAAAGAAAAAUCUUGAUUUUAGCUUUGCAGCUCUCAAACA ..(((............................((((.........))))............((((..((((((((......((((....)))).......))))))))..))))..))) (-16.18 = -16.50 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:37 2006