Locus 1033

Sequence ID 2L_DroMel_CAF1
Location 2,917,511 – 2,917,631
Length 120
Max. P 0.757374
window1662

overview

Window 2

Location 2,917,511 – 2,917,631
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.04
Mean single sequence MFE -19.33
Consensus MFE -16.18
Energy contribution -16.50
Covariance contribution 0.32
Combinations/Pair 1.09
Mean z-score -1.53
Structure conservation index 0.84
SVM decision value 0.49
SVM RNA-class probability 0.757374
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2917511 120 - 22407834
AUUGUAGAACGUGAAAAAAAACGAAAGAAACAAUCUAGGUGCAAAAUAGAAAGCAGAAUAACGAGAAAUGCAAGGCAGCGGAAAGAAAAAUCUUGAUUUUAGCUUUGCAGCUCUCAAACA
.((((....(((........)))..........((((.........))))..))))......((((..((((((((......((((....)))).......))))))))..))))..... ( -24.12)
>DroSec_CAF1 35923 120 - 1
AUUGUAGAACGUGAAAAAAAAAGAAAGAAACAAUCUAGGUGCAAAAUAGAAAGCAGAAUAACGAGAAAUGCAAGGCAGCGUAAAGAAAAAUCUUGAUUUUAGCUUUGCAACACUCAAACA
..(.((((..((.................))..)))).)(((..........))).......(((...((((((((......((((....)))).......))))))))...)))..... ( -17.25)
>DroSim_CAF1 36620 115 - 1
AUUGUAGAACGUGAA-----AAGAAAGAAACAAUCUAGGUGCAAAAUAGAAAGCAGAAUAACGAGAAAUGCAAGGCAGCGUAAAGAAAAAUCUUGAUUUUAGCUUUGCAACACUCAAACA
..(.((((..((...-----.........))..)))).)(((..........))).......(((...((((((((......((((....)))).......))))))))...)))..... ( -17.62)
>DroEre_CAF1 36770 118 - 1
AGUGUAAAACGUAAAAGAA--AAGCAGAAACAAUCUAGGUGCAAAAUAGAAAGCAGAAUAACGAGAAAUGCAAGGCAGCGGAAAGAAAAAUCUUGAUUUUAGUUUUGCAGCUCUCAGGCA
...................--..((........((((.........))))............((((..((((((((......((((....)))).......))))))))..))))..)). ( -20.32)
>DroYak_CAF1 36904 114 - 1
AUUGUAAACGGG----GAA--AAAAAGAAACAAUCUAGGUGCAAAAUAGAAAGCAGAAUAACGAGAAAUGCAAGGCAGCGGAAAUAAAAAUCUUGAUUUUAGUUCUGCAGCUCUCAAGCA
.(((((.....(----((.--............)))...)))))....((.(((..............(((...)))((((((...(((((....)))))..)))))).))).))..... ( -17.32)
>consensus
AUUGUAGAACGUGAAAAAA_AAGAAAGAAACAAUCUAGGUGCAAAAUAGAAAGCAGAAUAACGAGAAAUGCAAGGCAGCGGAAAGAAAAAUCUUGAUUUUAGCUUUGCAGCUCUCAAACA
..(((............................((((.........))))............((((..((((((((......((((....)))).......))))))))..))))..))) (-16.18 = -16.50 +   0.32) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:37 2006