Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,916,726 – 2,916,827 |
Length | 101 |
Max. P | 0.997806 |
Location | 2,916,726 – 2,916,827 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.22 |
Mean single sequence MFE | -29.44 |
Consensus MFE | -10.54 |
Energy contribution | -12.74 |
Covariance contribution | 2.20 |
Combinations/Pair | 1.09 |
Mean z-score | -2.84 |
Structure conservation index | 0.36 |
SVM decision value | 2.94 |
SVM RNA-class probability | 0.997806 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2916726 101 + 22407834 GCGAGGGAAAAUAAAUAAAUUAUUGGUGCUGCCGAGGAAAUUCU---CGCAACG-------------GUAUGAAAAAUCGGCGGGG---AAAAAAACGAGCAGCAAUUUUUCCUUUUAAU ..((((((((((.((((...))))..((((((((......((((---(((..((-------------((.......))))))))))---)......)).))))))))))))))))..... ( -28.10) >DroSec_CAF1 35158 113 + 1 GCGAGGGAAAAUAAAUAAAUUAUUGGUGCUGCCAAGGAAAUUCC---CCCAAGGAAUCGCGGGGGGGAAAUGAAAAGUCGGCGGG----AAAAAAGCGAGCUGCAAUUUUUCCUUUUAAU ..((((((((((..........((..(.(((((.......((((---(((..(......)..)))))))..((....))))))).----)..)).((.....)).))))))))))..... ( -32.10) >DroSim_CAF1 35833 117 + 1 GCGAGGGAAAAUAAAUAAAUUAUUGGUGCUGCCGAGGAAAUUCC---CCCAACGAAUCGCGGGGGGGAAAUGAAAAGUCGGCGGGGGAAAAAAAAGCGAGCAGCAAUUUUUCCUUUUAAU ..((((((((((................(((((((.....((((---(((..((...))..)))))))..(....).)))))))...........((.....)).))))))))))..... ( -35.30) >DroEre_CAF1 36009 95 + 1 GCGAGGAAAAAUAAAUAAAUUAUUGCCACUGCCGAGGAAAUUCCUCCCCGAACGAAA------------------AA----CGGGU---GGAAAAGCAAGCAGCAAUUUUUCCUUUUAAU ..((((((((((.............((((....((((.....)))).(((.......------------------..----)))))---))....((.....)).))))))))))..... ( -23.70) >DroYak_CAF1 36124 106 + 1 GCGAGGAAAAAUAAAUAAAUUAUUGGUACUGCCGCGGAAAUCCC---CCCAACGAAACG--GUUGGGAAAAGA--AG----GGGGA---GAAAAAGCAAGAAGCAAUUCUUCCUUUUAAU (((.(((..(((((.....)))))..).))..)))((....)).---((((((......--)))))).....(--((----(((((---(((...((.....))..)))))))))))... ( -28.00) >consensus GCGAGGGAAAAUAAAUAAAUUAUUGGUGCUGCCGAGGAAAUUCC___CCCAACGAAACG__G__GGGAAAUGAAAAGUCGGCGGGG___AAAAAAGCGAGCAGCAAUUUUUCCUUUUAAU ..((((((((((................(((((..((.....))...(((..............)))............)))))...........((.....)).))))))))))..... (-10.54 = -12.74 + 2.20)
Location | 2,916,726 – 2,916,827 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.22 |
Mean single sequence MFE | -24.93 |
Consensus MFE | -9.97 |
Energy contribution | -9.25 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.35 |
Mean z-score | -2.41 |
Structure conservation index | 0.40 |
SVM decision value | 1.87 |
SVM RNA-class probability | 0.980725 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2916726 101 - 22407834 AUUAAAAGGAAAAAUUGCUGCUCGUUUUUUU---CCCCGCCGAUUUUUCAUAC-------------CGUUGCG---AGAAUUUCCUCGGCAGCACCAAUAAUUUAUUUAUUUUCCCUCGC .......((((((..((((((.((.....((---(..(((((...........-------------))..)))---.)))......))))))))....(((.....)))))))))..... ( -18.20) >DroSec_CAF1 35158 113 - 1 AUUAAAAGGAAAAAUUGCAGCUCGCUUUUUU----CCCGCCGACUUUUCAUUUCCCCCCCGCGAUUCCUUGGG---GGAAUUUCCUUGGCAGCACCAAUAAUUUAUUUAUUUUCCCUCGC .......(((((((..((.....)).)))))----)).(((((........(((((((............)))---)))).....))))).............................. ( -24.62) >DroSim_CAF1 35833 117 - 1 AUUAAAAGGAAAAAUUGCUGCUCGCUUUUUUUUCCCCCGCCGACUUUUCAUUUCCCCCCCGCGAUUCGUUGGG---GGAAUUUCCUCGGCAGCACCAAUAAUUUAUUUAUUUUCCCUCGC .......((((((..((((((.((.......((((((((.(((....((.............)).))).))))---))))......))))))))....(((.....)))))))))..... ( -30.14) >DroEre_CAF1 36009 95 - 1 AUUAAAAGGAAAAAUUGCUGCUUGCUUUUCC---ACCCG----UU------------------UUUCGUUCGGGGAGGAAUUUCCUCGGCAGUGGCAAUAAUUUAUUUAUUUUUCCUCGC ......((((((((((((..((.(((.....---.((((----..------------------.......))))((((.....)))))))))..))))(((.....)))))))))))... ( -29.50) >DroYak_CAF1 36124 106 - 1 AUUAAAAGGAAGAAUUGCUUCUUGCUUUUUC---UCCCC----CU--UCUUUUCCCAAC--CGUUUCGUUGGG---GGGAUUUCCGCGGCAGUACCAAUAAUUUAUUUAUUUUUCCUCGC ......(((((((((((((....((......---(((((----(.--........((((--......))))))---)))).....))))))))....((((.....)))))))))))... ( -22.20) >consensus AUUAAAAGGAAAAAUUGCUGCUCGCUUUUUU___CCCCGCCGACUUUUCAUUUCCC__C__CGAUUCGUUGGG___GGAAUUUCCUCGGCAGCACCAAUAAUUUAUUUAUUUUCCCUCGC .......((((((..(((((((.....((((....(((................................)))...)))).......)))))))....(((.....)))))))))..... ( -9.97 = -9.25 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:36 2006