Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 328,650 – 328,762 |
Length | 112 |
Max. P | 0.603940 |
Location | 328,650 – 328,762 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 87.50 |
Mean single sequence MFE | -37.78 |
Consensus MFE | -31.66 |
Energy contribution | -31.42 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.24 |
Mean z-score | -1.71 |
Structure conservation index | 0.84 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603940 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 328650 112 + 22407834 GGGAUCCCUGCAGCACUUCUCCAGCGCUUCGCAGAGAUCAUUCUUUCCAUUUGGGUCUUGAACGAAACAAGUUACCAGCGAUUUGUACAGUUCAUCGUAGUUGCGGGGCUCC .(((.(((((((((((...(((((((...)))(((((....))))).....))))...(((((...(((((((......)))))))...)))))..)).))))))))).))) ( -37.20) >DroSec_CAF1 10402 112 + 1 GGGAUCCCUGCAGCACUUCUCCAGCGCUUCGCAGAGAUCAUUCUUUCCAUUCGGGUCUUGAACAAAACAAGUUACCAGCGAUUUGUACAGUUCAUCGUAGUUGCGGGGCUCA ..((.(((((((((((...(((.(((...)))(((((....)))))......)))...(((((...(((((((......)))))))...)))))..)).))))))))).)). ( -33.90) >DroSim_CAF1 10443 112 + 1 GGGAUCCCUGCAGCACUUCUCCAGCGCUUCGCAGAGAUCAUUCUUUCCAUUCGGGUCUUGAACAAAACAAGUUACCAGCGAUUUGUACAGUUCAUCGUAGUUGCGGGGCUCC .(((.(((((((((((...(((.(((...)))(((((....)))))......)))...(((((...(((((((......)))))))...)))))..)).))))))))).))) ( -35.50) >DroEre_CAF1 10840 112 + 1 GGGAUCCCUGCAGCACUUCUCCAGCGCUUGGCAGAGAUCAUUCUUUCCAUUCGGGUCUUGAACGAAGCAAGUUACCAGCGAUUUGUACAGUUCGUCGUAGUUGCGGGGCUCC .(((.(((((((((((........((..(((.(((((....))))))))..))......((((...(((((((......)))))))...))))...)).))))))))).))) ( -39.00) >DroYak_CAF1 10622 112 + 1 GGGAUCCCUGCAGCACUUCUCCAGCGCCUGGCAGAGAUCGUUCUUUCCAUCCGGGUCCUGAACGAAGCAAGUCACCAGCGACUUGUACAGUUCAUCGUAGUUUCGGGGCUCC .(((.(((((.(((((......((.((((((.(((((....)))))....)))))).))((((...(((((((......)))))))...))))...)).))).))))).))) ( -40.00) >DroAna_CAF1 14676 109 + 1 CGGAUCCUUGCAGCAUUUCUCAUAGGCCUCGCACAUAUCGU---UGCCGUCCUGCUGCUGGACGAAGCACGGUACGAGUGCCUUGUACAGUUCAUCAUAGUUGCGGGGCUCC .(((.(((((((((.........((((((((....((((((---.(((((((.......)))))..)))))))))))).))))((.......)).....))))))))).))) ( -41.10) >consensus GGGAUCCCUGCAGCACUUCUCCAGCGCUUCGCAGAGAUCAUUCUUUCCAUUCGGGUCUUGAACGAAACAAGUUACCAGCGAUUUGUACAGUUCAUCGUAGUUGCGGGGCUCC .(((.(((((((((...((((..((.....)).))))........(((....)))...(((((...(((((((......)))))))...))))).....))))))))).))) (-31.66 = -31.42 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:47 2006