Locus 1025

Sequence ID 2L_DroMel_CAF1
Location 2,911,551 – 2,911,670
Length 119
Max. P 0.647455
window1643

overview

Window 3

Location 2,911,551 – 2,911,670
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.03
Mean single sequence MFE -28.21
Consensus MFE -20.06
Energy contribution -21.46
Covariance contribution 1.40
Combinations/Pair 1.11
Mean z-score -2.19
Structure conservation index 0.71
SVM decision value 0.24
SVM RNA-class probability 0.647455
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2911551 119 + 22407834
AAGUAAACAAUUCGCUGGUCAAAAGCUGUAAGGAGAGUAAACACAGCUAGCUAAUUGAUUAAUGCCAAGUCAUAAAUUAAUGGCUGA-AAGCUGAGGUUGAGCAGGCAUUAAAUGCGGAU
..(((..(((((.((((((.....(((.(....).))).......)))))).))))).((((((((.((((((......))))))..-..(((.......))).)))))))).))).... ( -30.90)
>DroSec_CAF1 30045 120 + 1
AAGCAAACAAUUCGCUGGUCAAAAGCUGUAAGGAGAGUACACACAGCUAGCUAAUUGAUUAAUGCCAAGUCAUAAAUUAAUGGCUAAAAAGCUGAAGUUGAGCGGACAUUAAAUGCGGAU
..(((..(((((.(((.......((((((..(.......)..))))))))).))))).((((((((.((((((......)))))).....(((.......))))).)))))).))).... ( -29.51)
>DroSim_CAF1 30446 120 + 1
AAGCAAACAAUUCGCUGGUCAAAAGCUGUAAGGAGAGUACACACAGCUAGCUAAUUGAUUAAUGCCAAGUCAUAAAUUAAUGGCUAAAAAGCUGAAGUUGAGCAGGCAUUAAAUGCGGAU
..(((..(((((.(((.......((((((..(.......)..))))))))).))))).((((((((.((((((......)))))).....(((.......))).)))))))).))).... ( -33.21)
>DroEre_CAF1 30858 115 + 1
AAGUAAACAAUUCGCUGGUCAAACGCUGUAAAGAGAGUACACACAG----CUAAUUGAUUAAUGCCAAGUCAUAAAUUAAUGGCUGA-GAGUUGAGGUUGGGCAGGAAUUAAAUGCGGAU
..(((...(((((.(((.((((.((((((.............))))----).......(((((....((((((......))))))..-..)))))).)))).))))))))...))).... ( -25.62)
>DroYak_CAF1 31064 115 + 1
GAGUAAACAAUUCGCUGGUCAAAAGCUGUAAAGAGAGUACACAGAG----CUAAUUGAUUAAUGCCAAGUCAUAAAUUAAUGGUUGA-AAGUUGAAGUUGAGCAGGGAUUAAAUGCUGAU
.((((...(((((.(((.((((.(((((((.......)))....((----(((.((((((.(((......))).)))))))))))..-.))))....)))).))))))))...))))... ( -21.80)
>consensus
AAGUAAACAAUUCGCUGGUCAAAAGCUGUAAGGAGAGUACACACAGCUAGCUAAUUGAUUAAUGCCAAGUCAUAAAUUAAUGGCUGA_AAGCUGAAGUUGAGCAGGCAUUAAAUGCGGAU
..(((..(((((.((((((.....(((.(....).))).......)))))).))))).((((((((.((((((......)))))).....(((.......))).)))))))).))).... (-20.06 = -21.46 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:20 2006