Locus 1024

Sequence ID 2L_DroMel_CAF1
Location 2,910,526 – 2,910,644
Length 118
Max. P 0.518724
window1642

overview

Window 2

Location 2,910,526 – 2,910,644
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.43
Mean single sequence MFE -18.83
Consensus MFE -13.96
Energy contribution -13.48
Covariance contribution -0.48
Combinations/Pair 1.21
Mean z-score -1.56
Structure conservation index 0.74
SVM decision value -0.03
SVM RNA-class probability 0.518724
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2910526 118 - 22407834
CC--CCUUGAGCUUAACUCAAGUAUCUCUCAACUUGUCAGCUCCUCCUUAAAAAUUCGACCAUCUUUUAAUCAAAAGGCACAGCGGCAUAGAGGCACUACUACUUCAUUCCUGCCUGCUU
..--(((((((((.....(((((........)))))..)))))....((((((...........))))))....))))...(((((((..((((........)))).....)))).))). ( -20.20)
>DroSec_CAF1 29010 109 - 1
CC--CCUUGAGCUUAACUCAAGUAUCUCUCAACUUGUCAGCUC---CUUAAUAAUUCGACCAUCCUUUAAUCAAAAGGCAC------AUGGAGGCACUACUACUUCAUUCCUGCCUGCUU
..--....(((((.....(((((........)))))..)))))---.............................(((((.------((((((.........))))))...))))).... ( -20.70)
>DroSim_CAF1 29403 115 - 1
CC--CCUCGAGCUUAAUUCAAGUAUCUCUCAACUUGUCAGCUC---CUUAAAAAUUCGACCAUCCUUUAAUCAAAAGGCACAGCGCCAUGGAGGCACUACUACUUCAUUCCUGCCUGCUU
..--....(((((.....(((((........)))))..)))))---..............................(((.....)))..(.(((((...............))))).).. ( -20.46)
>DroEre_CAF1 29785 111 - 1
CCCCCCUCGAGCUUAACUCAAGUAUCUCUCAACUUGUCGGCUU---CUUAAAAAUUCGACCAUCCUUUAAUCAAAAGGCACAGCGCCGUAGAGGCACUACUACUUCAUUCCUGC------
........(((.....))).(((..(((((.....((((..((---......))..))))................(((.....)))).))))..)))................------ ( -17.90)
>DroYak_CAF1 30017 109 - 1
CC--CCUUGAGCUUAACUCAAGUAUCUCUCAACUUGUCAGCUC---CUUAAAAAUUCGACCAUCCUUUAAUCAAAAAGCACAGCGCCAUAGAGGCACUACUACUUCAUUCCUGC------
..--....(((((.....(((((........)))))..)))))---...................................((.(((.....))).))................------ ( -14.90)
>consensus
CC__CCUUGAGCUUAACUCAAGUAUCUCUCAACUUGUCAGCUC___CUUAAAAAUUCGACCAUCCUUUAAUCAAAAGGCACAGCGCCAUAGAGGCACUACUACUUCAUUCCUGCCUGCUU
....(((((((((.....(((((........)))))..)))))....................(((((.....)))))............)))).......................... (-13.96 = -13.48 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:18 2006