Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,910,526 – 2,910,644 |
Length | 118 |
Max. P | 0.518724 |
Location | 2,910,526 – 2,910,644 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.43 |
Mean single sequence MFE | -18.83 |
Consensus MFE | -13.96 |
Energy contribution | -13.48 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.21 |
Mean z-score | -1.56 |
Structure conservation index | 0.74 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518724 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2910526 118 - 22407834 CC--CCUUGAGCUUAACUCAAGUAUCUCUCAACUUGUCAGCUCCUCCUUAAAAAUUCGACCAUCUUUUAAUCAAAAGGCACAGCGGCAUAGAGGCACUACUACUUCAUUCCUGCCUGCUU ..--(((((((((.....(((((........)))))..)))))....((((((...........))))))....))))...(((((((..((((........)))).....)))).))). ( -20.20) >DroSec_CAF1 29010 109 - 1 CC--CCUUGAGCUUAACUCAAGUAUCUCUCAACUUGUCAGCUC---CUUAAUAAUUCGACCAUCCUUUAAUCAAAAGGCAC------AUGGAGGCACUACUACUUCAUUCCUGCCUGCUU ..--....(((((.....(((((........)))))..)))))---.............................(((((.------((((((.........))))))...))))).... ( -20.70) >DroSim_CAF1 29403 115 - 1 CC--CCUCGAGCUUAAUUCAAGUAUCUCUCAACUUGUCAGCUC---CUUAAAAAUUCGACCAUCCUUUAAUCAAAAGGCACAGCGCCAUGGAGGCACUACUACUUCAUUCCUGCCUGCUU ..--....(((((.....(((((........)))))..)))))---..............................(((.....)))..(.(((((...............))))).).. ( -20.46) >DroEre_CAF1 29785 111 - 1 CCCCCCUCGAGCUUAACUCAAGUAUCUCUCAACUUGUCGGCUU---CUUAAAAAUUCGACCAUCCUUUAAUCAAAAGGCACAGCGCCGUAGAGGCACUACUACUUCAUUCCUGC------ ........(((.....))).(((..(((((.....((((..((---......))..))))................(((.....)))).))))..)))................------ ( -17.90) >DroYak_CAF1 30017 109 - 1 CC--CCUUGAGCUUAACUCAAGUAUCUCUCAACUUGUCAGCUC---CUUAAAAAUUCGACCAUCCUUUAAUCAAAAAGCACAGCGCCAUAGAGGCACUACUACUUCAUUCCUGC------ ..--....(((((.....(((((........)))))..)))))---...................................((.(((.....))).))................------ ( -14.90) >consensus CC__CCUUGAGCUUAACUCAAGUAUCUCUCAACUUGUCAGCUC___CUUAAAAAUUCGACCAUCCUUUAAUCAAAAGGCACAGCGCCAUAGAGGCACUACUACUUCAUUCCUGCCUGCUU ....(((((((((.....(((((........)))))..)))))....................(((((.....)))))............)))).......................... (-13.96 = -13.48 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:18 2006