Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,909,825 – 2,909,935 |
Length | 110 |
Max. P | 0.811712 |
Location | 2,909,825 – 2,909,935 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 70.85 |
Mean single sequence MFE | -31.56 |
Consensus MFE | -8.08 |
Energy contribution | -11.72 |
Covariance contribution | 3.64 |
Combinations/Pair | 1.04 |
Mean z-score | -1.88 |
Structure conservation index | 0.26 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811712 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2909825 110 - 22407834 GGCUACUGCUGGUGAUUCACUUAAGCCCGAGCUC-UUUGGGUUCUCUCAUCUAUGAACUGCUGUCUCCAAAAGCGGCCAUCCA--CCCAAUCG----GGUGCCCCAC---CACCACCCAC (((..((..(((.(((.((....((((((((...-))))))))...(((....)))..))..))).)))..))..)))...((--(((....)----))))......---.......... ( -29.30) >DroSec_CAF1 28310 117 - 1 CGCUAGUGUUGGUGAUUCAUUUAAGCCCGAGCGC-UUUGGGUUCUCUCAUCUAUGGACUGCUGUGCCCAAAAGCGGCAAUCCU--CCCACUCGUCGUUGUGCCCCAACAACACCACCCAC .((.((((..(((((........((((((((...-))))))))...)))))...(((.((((((........)))))).))).--..)))).)).(((((......)))))......... ( -30.20) >DroSim_CAF1 28706 117 - 1 GGGUAGUGUUGGUGAUUCAUUUAAGCCCGAGCGC-UUUGGGUUCUCUCAUCUAUGGACUGCUGUGCCCAAAAGCGGCAAUCCU--CCCACUCGUCGUUGUGCCCCAACAACACCACCCAC ((((.(((((((((.(((..........))))))-.(((((.............(((.((((((........)))))).))).--..(((........))).))))))))))).)))).. ( -37.30) >DroEre_CAF1 29088 90 - 1 GG------------------UUUGGCCCGAGCGC-UUUUGGUUCCCUCAUCUACGGAUAGCUAUCCCCAAAAGCGCCCAAAAAGCCCCCAUCG----GCUGCC-------CACCACCCAC ((------------------(..(((..(.((((-((((((....((.(((....)))))......)))))))))).)....((((......)----))))))-------.)))...... ( -31.30) >DroYak_CAF1 29338 89 - 1 GG------------------UUAAGGCCGAGCGUAUUUUGGUUCCCUCAUCAAUGGACUGAUGUUCCCAAGAGCGCCAAUCCA--CCCCCUCG----GGUGGC-------CACCACCCAC ((------------------(...(((((.((((.((((((......(((((......)))))...))))))))))).....(--(((....)----))))))-------)...)))... ( -29.70) >consensus GG_UA_UG_UGGUGAUUCA_UUAAGCCCGAGCGC_UUUGGGUUCUCUCAUCUAUGGACUGCUGUCCCCAAAAGCGGCAAUCCA__CCCACUCG____GGUGCCCCA____CACCACCCAC ((....((((((...........((((((((....))))))))...........(((.((((((........)))))).))).....................))))))...))...... ( -8.08 = -11.72 + 3.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:17 2006