Locus 1023

Sequence ID 2L_DroMel_CAF1
Location 2,909,825 – 2,909,935
Length 110
Max. P 0.811712
window1641

overview

Window 1

Location 2,909,825 – 2,909,935
Length 110
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 70.85
Mean single sequence MFE -31.56
Consensus MFE -8.08
Energy contribution -11.72
Covariance contribution 3.64
Combinations/Pair 1.04
Mean z-score -1.88
Structure conservation index 0.26
SVM decision value 0.65
SVM RNA-class probability 0.811712
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2909825 110 - 22407834
GGCUACUGCUGGUGAUUCACUUAAGCCCGAGCUC-UUUGGGUUCUCUCAUCUAUGAACUGCUGUCUCCAAAAGCGGCCAUCCA--CCCAAUCG----GGUGCCCCAC---CACCACCCAC
(((..((..(((.(((.((....((((((((...-))))))))...(((....)))..))..))).)))..))..)))...((--(((....)----))))......---.......... ( -29.30)
>DroSec_CAF1 28310 117 - 1
CGCUAGUGUUGGUGAUUCAUUUAAGCCCGAGCGC-UUUGGGUUCUCUCAUCUAUGGACUGCUGUGCCCAAAAGCGGCAAUCCU--CCCACUCGUCGUUGUGCCCCAACAACACCACCCAC
.((.((((..(((((........((((((((...-))))))))...)))))...(((.((((((........)))))).))).--..)))).)).(((((......)))))......... ( -30.20)
>DroSim_CAF1 28706 117 - 1
GGGUAGUGUUGGUGAUUCAUUUAAGCCCGAGCGC-UUUGGGUUCUCUCAUCUAUGGACUGCUGUGCCCAAAAGCGGCAAUCCU--CCCACUCGUCGUUGUGCCCCAACAACACCACCCAC
((((.(((((((((.(((..........))))))-.(((((.............(((.((((((........)))))).))).--..(((........))).))))))))))).)))).. ( -37.30)
>DroEre_CAF1 29088 90 - 1
GG------------------UUUGGCCCGAGCGC-UUUUGGUUCCCUCAUCUACGGAUAGCUAUCCCCAAAAGCGCCCAAAAAGCCCCCAUCG----GCUGCC-------CACCACCCAC
((------------------(..(((..(.((((-((((((....((.(((....)))))......)))))))))).)....((((......)----))))))-------.)))...... ( -31.30)
>DroYak_CAF1 29338 89 - 1
GG------------------UUAAGGCCGAGCGUAUUUUGGUUCCCUCAUCAAUGGACUGAUGUUCCCAAGAGCGCCAAUCCA--CCCCCUCG----GGUGGC-------CACCACCCAC
((------------------(...(((((.((((.((((((......(((((......)))))...))))))))))).....(--(((....)----))))))-------)...)))... ( -29.70)
>consensus
GG_UA_UG_UGGUGAUUCA_UUAAGCCCGAGCGC_UUUGGGUUCUCUCAUCUAUGGACUGCUGUCCCCAAAAGCGGCAAUCCA__CCCACUCG____GGUGCCCCA____CACCACCCAC
((....((((((...........((((((((....))))))))...........(((.((((((........)))))).))).....................))))))...))...... ( -8.08 = -11.72 +   3.64) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:17 2006