| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,907,921 – 2,908,026 |
| Length | 105 |
| Max. P | 0.904130 |
| Location | 2,907,921 – 2,908,026 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.43 |
| Mean single sequence MFE | -28.75 |
| Consensus MFE | -18.14 |
| Energy contribution | -18.37 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.904130 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2907921 105 + 22407834 AUCAUACAGUUUGACAGCCCUUGGGUUUCACUUUUCUUGUCUUUUCGCUGGUGGCACGCGAUGCGUGUGCCACUUGUUUGGACCAAGUUACCCACCAACC-------AAG--------CC ........(((((........(((((...((((.....((((....((.(((((((((((...))))))))))).))..)))).)))).))))).....)-------)))--------). ( -32.52) >DroSec_CAF1 26438 113 + 1 AUCAUACAGUUUGACAGCCCUUGGGUUUCACUUUUCUUGUCUUUUCACUGGCGGCACGCGAUGCGUGUGCCACUUGUUUGGACCAAGUUACCCACCAACG-------AAGCCACCAACCC ...........(((.((((....)))))))..................((((((((((((...))))))))..((((((((..........)))..))))-------).))))....... ( -28.10) >DroSim_CAF1 26859 101 + 1 AUCAUACAGUUUGACAGCCCUUGGGUUUCACUUUUCUUGUCUUUUCACUGGUGGCACGCGAUGCGUGUGCCACUUGUUUGGACCAAGUUACCCAC-------------------CAACCC .....................(((((...((((.....((((....((.(((((((((((...))))))))))).))..)))).)))).))))).-------------------...... ( -30.30) >DroEre_CAF1 27176 117 + 1 AUCAUACAGUUUGACAGCCCCUGGGUUUCACUUUUCUUGUCUUUCCACUG---GCACGCGAUGCGUGUGCCACUUGUUUGGACCAAGUUACCCACCCACCAUCCCCCAAUCCCCCAAUCC .....................(((((...((((.....((((...((.((---(((((((...)))))))))..))...)))).)))).))))).......................... ( -24.90) >DroYak_CAF1 27380 98 + 1 AUCAUACAGUUUGACAGCCCUUGGGUUUCACUUUUCUUGUCUUUCCACUG---GCACGCGAUGCGUGUGCCACUUGUUUGGACCAAGUUGCCCACC-------------------AACCC .....................(((((...((((.....((((...((.((---(((((((...)))))))))..))...)))).)))).)))))..-------------------..... ( -25.30) >DroAna_CAF1 17247 87 + 1 AUUACUCCCUUUGAGAGU-----GUUUUCACUUUUCUAGCCGCUGCUGCGCUGGCACGCGAUGCGUGUGCCACUUGUUAGGAGCGAGUUGCC---------------------------- ...((((.((..((((((-----(....)))))))..))..(((.(((((.(((((((((...)))))))))..)).))).)))))))....---------------------------- ( -31.40) >consensus AUCAUACAGUUUGACAGCCCUUGGGUUUCACUUUUCUUGUCUUUUCACUGGUGGCACGCGAUGCGUGUGCCACUUGUUUGGACCAAGUUACCCACC___________________AACCC .....................(((((..........................((((((((...))))))))(((((.......))))).))))).......................... (-18.14 = -18.37 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:12 2006