Locus 102

Sequence ID 2L_DroMel_CAF1
Location 327,604 – 327,701
Length 97
Max. P 0.766220
window149 window150

overview

Window 9

Location 327,604 – 327,701
Length 97
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 76.12
Mean single sequence MFE -33.38
Consensus MFE -11.52
Energy contribution -11.25
Covariance contribution -0.27
Combinations/Pair 1.27
Mean z-score -2.41
Structure conservation index 0.35
SVM decision value 0.39
SVM RNA-class probability 0.717077
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 327604 97 + 22407834
CUAUUGCACAGCCUUGCUAAAAGUGAGUCCAGAUCCUUGGAGAUUU-------UGACAUCGCCUU---GUCGAUUUCUUCUCUGCAGGAUCUGC---UGCAAGCUUCGCA
....(((..(((((..(.....)..))..((((((((.(((((..(-------(((((......)---)))))..))))).....)))))))).---.....)))..))) ( -31.70)
>DroPse_CAF1 33366 105 + 1
C-GGUGCACAGUUUCGUCUUCAGCUUCUCCAGAGACUUGUAGAUUCGCGAAGAUGAC-CCGCCAUUCCGGCGGUUGC---ACCGCAGAAGCUGCUUCUGCAGCUGUUGCA
.-((((((.....((((((((.((.(((.(((....))).)))...)))))))))).-(((((.....))))).)))---)))((((.((((((....)))))).)))). ( -49.30)
>DroSec_CAF1 9394 97 + 1
CUGUUGCACAGCCUUGCUAAAAGUGCGUCCAGAUCGUUGGAGAGUU-------UGACAUCGCCUU---GUCGAUUUCUUCUCCGCAGGAUCUGC---UGCAAGCUUCGCA
....(((..((((((.....)))((((..((((((.((((((((.(-------(((((......)---)))))....))))))).).)))))).---)))).)))..))) ( -31.00)
>DroSim_CAF1 9415 97 + 1
CUGUUGCACAGCCUUGCUAAAAGUGCGUCCAGAUCGUUGGAGAGUU-------UGACAUCGCCUU---GUCGAUUUCUUCUCCGCAGGAUCUGC---UGCAAGCUUCGCA
....(((..((((((.....)))((((..((((((.((((((((.(-------(((((......)---)))))....))))))).).)))))).---)))).)))..))) ( -31.00)
>DroEre_CAF1 9722 97 + 1
CUAAUGCAAAGCCGUGUUAAUAGUGAAUUCAGAUCGUUGGAGAUUU-------UGACAUCGCCUU---GGCGAUUUCUUCUCUGCAGGAUCUGC---UGUAAGCUUCGAA
.((((((......))))))..(((..((.((((((.(((((((...-------.((.(((((...---.))))).)).)))))).).)))))).---.))..)))..... ( -26.30)
>DroYak_CAF1 9555 97 + 1
CUAUUGCAAAGCCGUGUUAAAAGCGAGUCCAGAUCAUUGGAGAUUU-------UGACAUCGCCUU---UGCGAUUUCGCUUCUGCAGGAUCUGC---UGUAGGCUUCGAA
..(((((((((.((((((((((.....(((((....)))))..)))-------))))).)).)))---))))))((((..(((((((......)---))))))...)))) ( -31.00)
>consensus
CUAUUGCACAGCCUUGCUAAAAGUGAGUCCAGAUCGUUGGAGAUUU_______UGACAUCGCCUU___GGCGAUUUCUUCUCCGCAGGAUCUGC___UGCAAGCUUCGCA
....((((..(((((((..........(((((....))))).............((.((((.........)))).))......)))))....))...))))......... (-11.52 = -11.25 +  -0.27) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 327,604 – 327,701
Length 97
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 76.12
Mean single sequence MFE -31.52
Consensus MFE -12.54
Energy contribution -14.02
Covariance contribution 1.47
Combinations/Pair 1.13
Mean z-score -2.28
Structure conservation index 0.40
SVM decision value 0.52
SVM RNA-class probability 0.766220
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 327604 97 - 22407834
UGCGAAGCUUGCA---GCAGAUCCUGCAGAGAAGAAAUCGAC---AAGGCGAUGUCA-------AAAUCUCCAAGGAUCUGGACUCACUUUUAGCAAGGCUGUGCAAUAG
((((.(((((((.---.((((((((...((((.((.((((..---....)))).)).-------...))))..))))))))(.....).....)))).))).)))).... ( -30.20)
>DroPse_CAF1 33366 105 - 1
UGCAACAGCUGCAGAAGCAGCUUCUGCGGU---GCAACCGCCGGAAUGGCGG-GUCAUCUUCGCGAAUCUACAAGUCUCUGGAGAAGCUGAAGACGAAACUGUGCACC-G
.(((..((((((....))))))..)))(((---(((.(((((.....)))))-.((.(((((((...((((........))))...)).))))).)).....))))))-. ( -45.50)
>DroSec_CAF1 9394 97 - 1
UGCGAAGCUUGCA---GCAGAUCCUGCGGAGAAGAAAUCGAC---AAGGCGAUGUCA-------AACUCUCCAACGAUCUGGACGCACUUUUAGCAAGGCUGUGCAACAG
((((.(((((...---.((((((.(..(((((.((.((((..---....)))).)).-------...))))).).))))))...((.......)).))))).)))).... ( -28.40)
>DroSim_CAF1 9415 97 - 1
UGCGAAGCUUGCA---GCAGAUCCUGCGGAGAAGAAAUCGAC---AAGGCGAUGUCA-------AACUCUCCAACGAUCUGGACGCACUUUUAGCAAGGCUGUGCAACAG
((((.(((((...---.((((((.(..(((((.((.((((..---....)))).)).-------...))))).).))))))...((.......)).))))).)))).... ( -28.40)
>DroEre_CAF1 9722 97 - 1
UUCGAAGCUUACA---GCAGAUCCUGCAGAGAAGAAAUCGCC---AAGGCGAUGUCA-------AAAUCUCCAACGAUCUGAAUUCACUAUUAACACGGCUUUGCAUUAG
..(((((((....---.((((((.((.(((...((.(((((.---...))))).)).-------...))).))..))))))(((.....))).....)))))))...... ( -23.70)
>DroYak_CAF1 9555 97 - 1
UUCGAAGCCUACA---GCAGAUCCUGCAGAAGCGAAAUCGCA---AAGGCGAUGUCA-------AAAUCUCCAAUGAUCUGGACUCGCUUUUAACACGGCUUUGCAAUAG
..(((((((....---((((...))))((((((((.(((((.---...)))))(((.-------..(((......)))...))))))))))).....)))))))...... ( -32.90)
>consensus
UGCGAAGCUUGCA___GCAGAUCCUGCAGAGAAGAAAUCGAC___AAGGCGAUGUCA_______AAAUCUCCAACGAUCUGGACUCACUUUUAACAAGGCUGUGCAACAG
((((.(((((......((((...))))......((.((((.........)))).)).............((((......)))).............))))).)))).... (-12.54 = -14.02 +   1.47) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:46 2006