Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 327,604 – 327,701 |
Length | 97 |
Max. P | 0.766220 |
Location | 327,604 – 327,701 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 76.12 |
Mean single sequence MFE | -33.38 |
Consensus MFE | -11.52 |
Energy contribution | -11.25 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.27 |
Mean z-score | -2.41 |
Structure conservation index | 0.35 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717077 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 327604 97 + 22407834 CUAUUGCACAGCCUUGCUAAAAGUGAGUCCAGAUCCUUGGAGAUUU-------UGACAUCGCCUU---GUCGAUUUCUUCUCUGCAGGAUCUGC---UGCAAGCUUCGCA ....(((..(((((..(.....)..))..((((((((.(((((..(-------(((((......)---)))))..))))).....)))))))).---.....)))..))) ( -31.70) >DroPse_CAF1 33366 105 + 1 C-GGUGCACAGUUUCGUCUUCAGCUUCUCCAGAGACUUGUAGAUUCGCGAAGAUGAC-CCGCCAUUCCGGCGGUUGC---ACCGCAGAAGCUGCUUCUGCAGCUGUUGCA .-((((((.....((((((((.((.(((.(((....))).)))...)))))))))).-(((((.....))))).)))---)))((((.((((((....)))))).)))). ( -49.30) >DroSec_CAF1 9394 97 + 1 CUGUUGCACAGCCUUGCUAAAAGUGCGUCCAGAUCGUUGGAGAGUU-------UGACAUCGCCUU---GUCGAUUUCUUCUCCGCAGGAUCUGC---UGCAAGCUUCGCA ....(((..((((((.....)))((((..((((((.((((((((.(-------(((((......)---)))))....))))))).).)))))).---)))).)))..))) ( -31.00) >DroSim_CAF1 9415 97 + 1 CUGUUGCACAGCCUUGCUAAAAGUGCGUCCAGAUCGUUGGAGAGUU-------UGACAUCGCCUU---GUCGAUUUCUUCUCCGCAGGAUCUGC---UGCAAGCUUCGCA ....(((..((((((.....)))((((..((((((.((((((((.(-------(((((......)---)))))....))))))).).)))))).---)))).)))..))) ( -31.00) >DroEre_CAF1 9722 97 + 1 CUAAUGCAAAGCCGUGUUAAUAGUGAAUUCAGAUCGUUGGAGAUUU-------UGACAUCGCCUU---GGCGAUUUCUUCUCUGCAGGAUCUGC---UGUAAGCUUCGAA .((((((......))))))..(((..((.((((((.(((((((...-------.((.(((((...---.))))).)).)))))).).)))))).---.))..)))..... ( -26.30) >DroYak_CAF1 9555 97 + 1 CUAUUGCAAAGCCGUGUUAAAAGCGAGUCCAGAUCAUUGGAGAUUU-------UGACAUCGCCUU---UGCGAUUUCGCUUCUGCAGGAUCUGC---UGUAGGCUUCGAA ..(((((((((.((((((((((.....(((((....)))))..)))-------))))).)).)))---))))))((((..(((((((......)---))))))...)))) ( -31.00) >consensus CUAUUGCACAGCCUUGCUAAAAGUGAGUCCAGAUCGUUGGAGAUUU_______UGACAUCGCCUU___GGCGAUUUCUUCUCCGCAGGAUCUGC___UGCAAGCUUCGCA ....((((..(((((((..........(((((....))))).............((.((((.........)))).))......)))))....))...))))......... (-11.52 = -11.25 + -0.27)
Location | 327,604 – 327,701 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 76.12 |
Mean single sequence MFE | -31.52 |
Consensus MFE | -12.54 |
Energy contribution | -14.02 |
Covariance contribution | 1.47 |
Combinations/Pair | 1.13 |
Mean z-score | -2.28 |
Structure conservation index | 0.40 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.766220 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 327604 97 - 22407834 UGCGAAGCUUGCA---GCAGAUCCUGCAGAGAAGAAAUCGAC---AAGGCGAUGUCA-------AAAUCUCCAAGGAUCUGGACUCACUUUUAGCAAGGCUGUGCAAUAG ((((.(((((((.---.((((((((...((((.((.((((..---....)))).)).-------...))))..))))))))(.....).....)))).))).)))).... ( -30.20) >DroPse_CAF1 33366 105 - 1 UGCAACAGCUGCAGAAGCAGCUUCUGCGGU---GCAACCGCCGGAAUGGCGG-GUCAUCUUCGCGAAUCUACAAGUCUCUGGAGAAGCUGAAGACGAAACUGUGCACC-G .(((..((((((....))))))..)))(((---(((.(((((.....)))))-.((.(((((((...((((........))))...)).))))).)).....))))))-. ( -45.50) >DroSec_CAF1 9394 97 - 1 UGCGAAGCUUGCA---GCAGAUCCUGCGGAGAAGAAAUCGAC---AAGGCGAUGUCA-------AACUCUCCAACGAUCUGGACGCACUUUUAGCAAGGCUGUGCAACAG ((((.(((((...---.((((((.(..(((((.((.((((..---....)))).)).-------...))))).).))))))...((.......)).))))).)))).... ( -28.40) >DroSim_CAF1 9415 97 - 1 UGCGAAGCUUGCA---GCAGAUCCUGCGGAGAAGAAAUCGAC---AAGGCGAUGUCA-------AACUCUCCAACGAUCUGGACGCACUUUUAGCAAGGCUGUGCAACAG ((((.(((((...---.((((((.(..(((((.((.((((..---....)))).)).-------...))))).).))))))...((.......)).))))).)))).... ( -28.40) >DroEre_CAF1 9722 97 - 1 UUCGAAGCUUACA---GCAGAUCCUGCAGAGAAGAAAUCGCC---AAGGCGAUGUCA-------AAAUCUCCAACGAUCUGAAUUCACUAUUAACACGGCUUUGCAUUAG ..(((((((....---.((((((.((.(((...((.(((((.---...))))).)).-------...))).))..))))))(((.....))).....)))))))...... ( -23.70) >DroYak_CAF1 9555 97 - 1 UUCGAAGCCUACA---GCAGAUCCUGCAGAAGCGAAAUCGCA---AAGGCGAUGUCA-------AAAUCUCCAAUGAUCUGGACUCGCUUUUAACACGGCUUUGCAAUAG ..(((((((....---((((...))))((((((((.(((((.---...)))))(((.-------..(((......)))...))))))))))).....)))))))...... ( -32.90) >consensus UGCGAAGCUUGCA___GCAGAUCCUGCAGAGAAGAAAUCGAC___AAGGCGAUGUCA_______AAAUCUCCAACGAUCUGGACUCACUUUUAACAAGGCUGUGCAACAG ((((.(((((......((((...))))......((.((((.........)))).)).............((((......)))).............))))).)))).... (-12.54 = -14.02 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:46 2006