Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,907,402 – 2,907,514 |
Length | 112 |
Max. P | 0.737911 |
Location | 2,907,402 – 2,907,514 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 88.42 |
Mean single sequence MFE | -22.45 |
Consensus MFE | -15.72 |
Energy contribution | -17.12 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.20 |
Structure conservation index | 0.70 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.737911 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2907402 112 - 22407834 CGCCUCGUAAACUUUUCCUUGCAAGCAGCAAGGUUUGCGUUGUGAAAAGUGAAAUCUAUAAUAAAAAUUUUCACACAGCA-CUUUUCCUUGCGAUUCCU-UACUAACUUACCUA ....((((((......((((((.....))))))..(((..((((((((...................))))))))..)))-.......)))))).....-.............. ( -23.01) >DroSec_CAF1 25923 112 - 1 CGCCUCGUAAACUUUUCCUUGCAAGCAGCAAGGUUUGCGUUGUGAAAAGUGAAAUCUAUAAUAAAAAAUUUCACACAGCA-CUUUUCCUAGCGAUUCCU-UACUUACUUACCUA ......((((......((((((.....))))))....(((((.((((((((........(((.....)))........))-)))))).))))).....)-)))........... ( -23.29) >DroSim_CAF1 26339 112 - 1 CGCCUCGUAAACUUUUCCUUGCAAGCAGCAAGGUUUGCGUUGUGAAAAGUGAAAUCUAUAAUAAAAAAUUUCACACAGCA-CUUUUCCUUGCGAUUCCU-UACUUACUUACUUA (((..((((((.....((((((.....))))))))))))..)))....(((((((............)))))))...(((-........))).......-.............. ( -22.70) >DroEre_CAF1 26647 97 - 1 CGGCUCGUAAACUUUUCCU-------UGCAAGGUUUGCGUUGUGAAAAGUGAAAUCUAUAAUAAAAAAUUUCACACAGCA-CUUUUCCUUGCGAUUCCU-UACUUA-------- ..................(-------(((((((...(.(((((.....(((((((............)))))))))))).-)....)))))))).....-......-------- ( -19.80) >DroYak_CAF1 26838 100 - 1 CGCCUCGUAAACUUUUCCUU------UGCAAGGUUUGCGUUGUGAAAAGUGAAAUCUAUAAUAAAAAUUUUCACACAGCAACUUCUCCUGGCGAUUCCUUUACUUA-------- ((((..(((((((((.....------...)))))))))(((((.....((((((..............))))))...))))).......)))).............-------- ( -23.44) >consensus CGCCUCGUAAACUUUUCCUUGCAAGCAGCAAGGUUUGCGUUGUGAAAAGUGAAAUCUAUAAUAAAAAAUUUCACACAGCA_CUUUUCCUUGCGAUUCCU_UACUUACUUAC_UA ....((((((......((((((.....))))))..(((..(((((((.....................)))))))..)))........)))))).................... (-15.72 = -17.12 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:11 2006