Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,906,128 – 2,906,246 |
Length | 118 |
Max. P | 0.500000 |
Location | 2,906,128 – 2,906,246 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.75 |
Mean single sequence MFE | -26.12 |
Consensus MFE | -21.62 |
Energy contribution | -22.86 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.27 |
Structure conservation index | 0.83 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2906128 118 - 22407834 AGGCAAAGUACUUGGAAAAAUUCAGUCAAAUAUUUAAUGUUUAUUUUGCCAGCUGCUUAGAUUUGUUUAAUGUCACCGCAUCUAAGUGACUUUUGUGGCAUUCUGAAAUCAAAAUACU-- .((((((((..(((((....)))))..((((((...)))))))))))))).........(((((.(..(((((((((((......)))......))))))))..))))))........-- ( -21.40) >DroSec_CAF1 24635 120 - 1 AGGCAAAGUACUUGGAAAAAUUCAGUCAAAUAUUUAAUGUUUAUUUUGCCAGCUGCUUAGAUUUGUUUAAUGUCACCGCAUCUAAGUGGCUUUUGUGGCAUUCUGAAAUCAAAGCAAUGU .((((((((..(((((....)))))..((((((...))))))))))))))...(((((.(((((.(..(((((((((((......))))......)))))))..)))))).))))).... ( -27.90) >DroSim_CAF1 25046 120 - 1 AGGCAAAGUACUUGGAAAAAUUCAGUCAAAUAUUUAAUGUUUAUUUUGCCAGCUGCUAAGAUUUGUUUAAUGUCACCGCAUCUAAGUGGCUUUUGUGGCAUUCUGAAAUCAAAGCAAUGU .((((((((..(((((....)))))..((((((...))))))))))))))...((((..(((((.(..(((((((((((......))))......)))))))..))))))..)))).... ( -26.10) >DroEre_CAF1 25384 116 - 1 AGGCAAAGUACUUGGAAAAAUUAAUUCAAAUAUUUAAUGUUUACUUUGCCAGUGGCUUAGACUUGUUUAAUGUCACCGCAUCUCAGUGGCUUUUGUGGCAUUCUGAAAUCAA----AUGU .(((((((((.....(((.(((......))).)))......))))))))).((((((((((....))))).)))))......((((..(((.....)))...))))......----.... ( -26.70) >DroYak_CAF1 25572 120 - 1 AGGCAAAGUACUUGGAAAAAUUCAUUCAAAUAUUUAAUGUUUACUUUGCCAGUUGCUUAAAUUUGUUUAAUGUCACCGCAACUUAGUGGCUUUUGUGGCAUUCUGAAAUCAAAGCAAUGU .((((((((...((((....))))...((((((...)))))))))))))).(((((((..((((.(..(((((((((((......))))......)))))))..)))))..))))))).. ( -28.50) >consensus AGGCAAAGUACUUGGAAAAAUUCAGUCAAAUAUUUAAUGUUUAUUUUGCCAGCUGCUUAGAUUUGUUUAAUGUCACCGCAUCUAAGUGGCUUUUGUGGCAUUCUGAAAUCAAAGCAAUGU .(((((((((.....(((.(((......))).)))......)))))))))...(((((.(((((.(..(((((((((((......)))......))))))))..)))))).))))).... (-21.62 = -22.86 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:10 2006