Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,901,471 – 2,901,583 |
Length | 112 |
Max. P | 0.978342 |
Location | 2,901,471 – 2,901,583 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 93.29 |
Mean single sequence MFE | -31.66 |
Consensus MFE | -28.72 |
Energy contribution | -28.36 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.14 |
Mean z-score | -1.64 |
Structure conservation index | 0.91 |
SVM decision value | 1.81 |
SVM RNA-class probability | 0.978342 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2901471 112 - 22407834 UCAUGUGCU-------GCGUGUUGUGUGUUGCGGGUGAAGCAACGAAAGGGGCUAAAUUUGUUACUCCGAGUUUGGAACCGCGCGCGCGUUGAAAAGAAAUGAAAAUGUGUUAAGGUUU ((((((((.-------((((......((((((.......))))))...((..(((((((((......)))))))))..))))))))))).))).......................... ( -33.00) >DroSec_CAF1 20070 112 - 1 UCAUGUGCU-------GCGUGUUGUGUGUUGCGGGGGAAGCAACGAAAGGGGCUAAAUUUGUUACUUCGAGUUUGGAACCGCGCGCGCGUUGAAAAGAAAUGAAAAUGUGUUAAGGUUU ((((((((.-------((((......((((((.......))))))...((..(((((((((......)))))))))..))))))))))).))).......................... ( -33.50) >DroSim_CAF1 20441 112 - 1 UCAUGUGCU-------GCGUGUUGUGUGUUGCGGGGGAAGCAACGAAAGGGGCUAAAUUUGUUACUUCGAGUUUGGAACCGCGCGCGCGUUGAAAAGAAAUGAAAAUGUGUUAAGGUUU ((((((((.-------((((......((((((.......))))))...((..(((((((((......)))))))))..))))))))))).))).......................... ( -33.50) >DroEre_CAF1 20586 119 - 1 UCAUGUGCUGUGUGCUGUGUGUUGUGUGUUGCGGGGUAAGCAAGGAAAGGGGCUAAAUUUGUUACUUCAAGUUUGGAACCGUGCGCGCGUUGAAAAGAAAUGAAAAUGUGUUAAGGUUU ....(..((((.((((.((((........)))).)))).)))......((..(((((((((......)))))))))..)))..)(((((((....(....)...)))))))........ ( -30.60) >DroYak_CAF1 20727 110 - 1 UCAUGUGCU-------GUGUGUUGUGUGUUGCGGGGAAAGCAGUGAAAGGGGCUAAAUUUGUUACUUCAAGUUUGGAACCG--CGCGCGUUGAAAAGAAAUGAAAAUGUGUUAAGGUUU ((((.((((-------...(.((((.....)))).)..))))))))..((..(((((((((......)))))))))..)).--.(((((((....(....)...)))))))........ ( -27.70) >consensus UCAUGUGCU_______GCGUGUUGUGUGUUGCGGGGGAAGCAACGAAAGGGGCUAAAUUUGUUACUUCGAGUUUGGAACCGCGCGCGCGUUGAAAAGAAAUGAAAAUGUGUUAAGGUUU ((((...((.......((((((....((((((.......))))))...((..(((((((((......)))))))))..))..)))))).......))..))))................ (-28.72 = -28.36 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:06 2006