Locus 1015

Sequence ID 2L_DroMel_CAF1
Location 2,899,918 – 2,900,032
Length 114
Max. P 0.949251
window1628

overview

Window 8

Location 2,899,918 – 2,900,032
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.47
Mean single sequence MFE -23.19
Consensus MFE -18.22
Energy contribution -19.02
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -2.20
Structure conservation index 0.79
SVM decision value 1.39
SVM RNA-class probability 0.949251
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2899918 114 + 22407834
UGGUAUAGUUUAUAAACCAAUUUCAAUUUCAUUGUUGUCUGCUGCUGGCAAACAAAAA-A-----CCCAAUCCCCUCGAGGUUUAUAAAUAAUUUCCCAUAGCGCCAUUAUAUGGUCGUA
(((.((.(((((((((((.....((((...))))((((.(((.....))).))))...-.-----..............))))))))))).))...)))..(((((((...)))).))). ( -23.30)
>DroSec_CAF1 18530 115 + 1
UGGAAUAGUUUAUAAACCAAUUUCAAUUUCAUUGUUGUCUGCUGCUGGCAAACAAAAAAA-----CCCAACCCCCUCGAGGUUUAUAAAUAAUUUCCCAUAGCGCCAUUAUAUGGUCGUA
.((((..(((((((((((.....((((...))))((((.(((.....))).)))).....-----..............)))))))))))...))))....(((((((...)))).))). ( -25.50)
>DroSim_CAF1 18892 120 + 1
UGGAAUAGUUUAUAAACCAAUUUCAAUUUCAUUGUUGUCUGCUGCUGGCAAACAAAAAAACCGAACCCAACCCCCUCGAGGUUUAUAAAUAAUUUCCCAUAGCGCCAUUAUAUGGUCGUA
.((((..(((((((((((................((((.(((.....))).))))......(((...........))).)))))))))))...))))....(((((((...)))).))). ( -27.00)
>DroEre_CAF1 18943 106 + 1
UGGAAUAGUUUAUAAACCAAUUUCACUUUCAUUGUUGUCUG---CUGGCAAACAAAAA-----------UCCCCCUCUAGGUUUAUAAAUAAUUUGCCAUAGCGCCAUUAUAUGGUCCUA
(((.((.(((((((((((.............((((((((..---..))).)))))...-----------..........))))))))))).))...)))(((.(((((...))))).))) ( -22.27)
>DroYak_CAF1 19073 104 + 1
UGUAAUAGUUUAUAAACCAAUUUCAAUUUCAUUGUUGUCUG---CUGGCAAACAAAA-------------CCCCUUCUAGGUUUAUAAAUAAUUUCCCAUAGCGCCAUUAUAUGGUCUUA
.......(((((((((((.....((((...))))(((((..---..)))))......-------------.........)))))))))))......(((((.........)))))..... ( -17.90)
>consensus
UGGAAUAGUUUAUAAACCAAUUUCAAUUUCAUUGUUGUCUGCUGCUGGCAAACAAAAA_A_____CCCAACCCCCUCGAGGUUUAUAAAUAAUUUCCCAUAGCGCCAUUAUAUGGUCGUA
.(((((.(((((((((((.....((((...))))(((((.......)))))............................))))))))))).)))))(((((.........)))))..... (-18.22 = -19.02 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:05 2006