Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,899,541 – 2,899,655 |
Length | 114 |
Max. P | 0.690832 |
Location | 2,899,541 – 2,899,655 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.04 |
Mean single sequence MFE | -30.20 |
Consensus MFE | -29.32 |
Energy contribution | -29.32 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.12 |
Structure conservation index | 0.97 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690832 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2899541 114 - 22407834 UUUCAUGAUUGUUAUUCUUGUUGCCGCCUGCUUUUCAUUUGCGUUAAGUGGGUGGUCAGAAAAUACGGCAAACAAAACGC------CACCGUCAUCGUCUAUCUGGAUUUUGCGGAAUUU ..........((..((((....((((((..(((..(......)..)))..)))))).))))...))(((.........))------).(((.((..((((....))))..)))))..... ( -29.70) >DroSec_CAF1 18113 114 - 1 UUUCAUGAUUGUUAUUCUUGUUGCCGCCUGCUUUUCAUUUGCGUUAAGUGGGUGGUCAGAAAAUACGGCAAACAAAACGC------CACCGCCAUCGUCUAUCUGGAUUUUGCGGAAUUU ..........((..((((....((((((..(((..(......)..)))..)))))).))))...))(((.........))------).((((.(..((((....))))..)))))..... ( -29.70) >DroSim_CAF1 18472 114 - 1 UUUCAUGAUUGUUAUUCUUGUUGCCGCCUGCUUUUCAUUUGCGUUAAGUGGGUGGUCAGAAAAUACGGCAAACAAAACGC------CACCGCCAUCGUCUAUCUGGAUUUUGCGGAAUUU ..........((..((((....((((((..(((..(......)..)))..)))))).))))...))(((.........))------).((((.(..((((....))))..)))))..... ( -29.70) >DroEre_CAF1 18528 119 - 1 -UUUCUGAUUGUUAUUCUUGUUGCCGCCUGCUUUUCAUUUGCGUUAAGUGGGUGGUCAGAAAAUACGGCAAACAAAACGCCAGCGCCACCGCCAUCGUCUAUCUGGAUUUUGCGGAAUUU -((((((...............((((((..(((..(......)..)))..))))))))))))....(((.........))).......((((.(..((((....))))..)))))..... ( -30.96) >DroYak_CAF1 18689 113 - 1 -UUUCUGAUUGUUAUUCUUGUUGCCGCCUGCUUUUCAUUUGCGUUAAGUGGGUGGUCAGAAAAUACGGCAAACAAAACGC------CACCGCCAUCGUCUAUCUGGAUUUUGCGGAAUUU -((((((...............((((((..(((..(......)..)))..))))))))))))....(((.........))------).((((.(..((((....))))..)))))..... ( -30.96) >consensus UUUCAUGAUUGUUAUUCUUGUUGCCGCCUGCUUUUCAUUUGCGUUAAGUGGGUGGUCAGAAAAUACGGCAAACAAAACGC______CACCGCCAUCGUCUAUCUGGAUUUUGCGGAAUUU .....((.((((..(.....((((((((..(((..(......)..)))..))))).))).....)..)))).))..............(((.((..((((....))))..)))))..... (-29.32 = -29.32 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:04 2006