Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,898,526 – 2,898,712 |
Length | 186 |
Max. P | 0.999960 |
Location | 2,898,526 – 2,898,645 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.64 |
Mean single sequence MFE | -35.62 |
Consensus MFE | -33.02 |
Energy contribution | -33.74 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.06 |
Mean z-score | -3.33 |
Structure conservation index | 0.93 |
SVM decision value | 4.90 |
SVM RNA-class probability | 0.999960 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2898526 119 - 22407834 GGGAAAUUCCUAAUUGAAA-AGGGUUAGUUCAUUUCUAUUAGCCCAAAUGUCCUGCGUGUUAUGAUUAUUCCGGGAAUAAUAAUGGAGUAAGUUAUGAUGAUUGCCAGAAUUUCCCACAA (((((((((..........-.((((((((........)))))))).........(((.(((((((((((((((..........)))))).)))))))))...)))..))))))))).... ( -35.70) >DroSec_CAF1 17121 119 - 1 GGGAAAUUCCUAAUUGAAA-AGGGUUAGUGCAUUUCUAUUAGCCCAAAUGUCCUGCGUGUUAUGAUUAUUCCGGGAAUAAUAAUGGAGUAAGUUAUGAUGAUUGCCAGAAUUUCCCACAA (((((((((..........-.(((((((((......))))))))).........(((.(((((((((((((((..........)))))).)))))))))...)))..))))))))).... ( -36.30) >DroSim_CAF1 17495 117 - 1 GGGAAAUUCCUAAUUGAAA-AGGGUUAGUGCAUUUCUAUUAGCCCAAAUGUCCUGCGUGUUAUGAUUAUUCCGGGAAUAAUAAUGGAGUAAGUUAUGAUGAUUGCCAGAAUUUCCCAC-- (((((((((..........-.(((((((((......))))))))).........(((.(((((((((((((((..........)))))).)))))))))...)))..)))))))))..-- ( -36.30) >DroEre_CAF1 17480 119 - 1 GGGAAAUUCCCAAUUGAAA-AAGGCUAGUGCAUUUGUAUUAGCCCAAAUGUCCUGCGUGUUAUGAUUAUUCCGGGAAUAAUAAUGGAGUAAGUUAUGAUGAUUGCCAGAAUUUCCCACAA (((((((((.(((((....-..(((((((((....)))))))))..............(((((((((((((((..........)))))).))))))))))))))...))))))))).... ( -38.70) >DroYak_CAF1 17653 120 - 1 GGGAAAUUCCUAAUUGAAAGAAGGCUAGAGCAUUUCUACUAACCCAAAUGUCCUGCGUGUUAUGAUUAUUCCGGGAAUAAUAAUGGAGUAAGUUAUGAUGAUUGCCCGAAUUUCCCACAA (((((((((....((....)).((((((..(((((..........)))))..)))...(((((((((((((((..........)))))).)))))))))....))).))))))))).... ( -31.10) >consensus GGGAAAUUCCUAAUUGAAA_AGGGUUAGUGCAUUUCUAUUAGCCCAAAUGUCCUGCGUGUUAUGAUUAUUCCGGGAAUAAUAAUGGAGUAAGUUAUGAUGAUUGCCAGAAUUUCCCACAA (((((((((............(((((((((......))))))))).........(((.(((((((((((((((..........)))))).)))))))))...)))..))))))))).... (-33.02 = -33.74 + 0.72)
Location | 2,898,566 – 2,898,684 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.80 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -21.42 |
Energy contribution | -21.66 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.14 |
Mean z-score | -1.82 |
Structure conservation index | 0.78 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.831137 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2898566 118 - 22407834 CCAAACAUUUAUUAUUCGC-UAGAAAUCAUUGAAAAUACUGGGAAAUUCCUAAUUGAAA-AGGGUUAGUUCAUUUCUAUUAGCCCAAAUGUCCUGCGUGUUAUGAUUAUUCCGGGAAUAA ...........((((((.(-..((((((((....((((((((((..(((......))).-.((((((((........)))))))).....))))).))))))))))..)))..))))))) ( -25.60) >DroSec_CAF1 17161 115 - 1 CCAAAAA---AUUAUUCGC-CAGAAGUCAUUGAAAAUACUGGGAAAUUCCUAAUUGAAA-AGGGUUAGUGCAUUUCUAUUAGCCCAAAUGUCCUGCGUGUUAUGAUUAUUCCGGGAAUAA .......---.((((((.(-(.((((((((....((((((((((..(((......))).-.(((((((((......))))))))).....))))).))))))))))..))).)))))))) ( -27.90) >DroSim_CAF1 17533 115 - 1 CCAAAUA---AUUAUUCGC-UAGAAGUCAUUGAAAAUACUGGGAAAUUCCUAAUUGAAA-AGGGUUAGUGCAUUUCUAUUAGCCCAAAUGUCCUGCGUGUUAUGAUUAUUCCGGGAAUAA .......---.((((((.(-..((((((((....((((((((((..(((......))).-.(((((((((......))))))))).....))))).))))))))))..)))..))))))) ( -26.50) >DroEre_CAF1 17520 116 - 1 CUAACUG---AUUGUUCUCACAACAGUCAUUUGGAAUACUGGGAAAUUCCCAAUUGAAA-AAGGCUAGUGCAUUUGUAUUAGCCCAAAUGUCCUGCGUGUUAUGAUUAUUCCGGGAAUAA .......---.(((((((((((.(((.((((((......((((.....)))).......-..(((((((((....)))))))))))))))..)))..)))...((....)).)))))))) ( -32.90) >DroYak_CAF1 17693 116 - 1 UCAAAUG---AUUAUUCAC-CAAUGGUCAUUGAAAAUACUGGGAAAUUCCUAAUUGAAAGAAGGCUAGAGCAUUUCUACUAACCCAAAUGUCCUGCGUGUUAUGAUUAUUCCGGGAAUAA .......---.((((((.(-((((((((((....(((((((((.....))))...........((.((..(((((..........)))))..))))))))))))))))))..)))))))) ( -23.60) >consensus CCAAAUA___AUUAUUCGC_CAGAAGUCAUUGAAAAUACUGGGAAAUUCCUAAUUGAAA_AGGGUUAGUGCAUUUCUAUUAGCCCAAAUGUCCUGCGUGUUAUGAUUAUUCCGGGAAUAA ...........((((((.(.....((((((....((((((((((..(((......)))...(((((((((......))))))))).....))))).))))))))))).....).)))))) (-21.42 = -21.66 + 0.24)
Location | 2,898,606 – 2,898,712 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.07 |
Mean single sequence MFE | -22.12 |
Consensus MFE | -2.55 |
Energy contribution | -1.95 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.50 |
Mean z-score | -1.56 |
Structure conservation index | 0.12 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.723279 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2898606 106 + 22407834 AAUAGAAAUGAACUAACCCU-UUUCAAUUAGGAAUUUCCCAGUAUUUUCAAUGAUUUCUA-GCGAAUAAUAAAUGUUUGGUAGGAA------------AAACAGUGCGCAAUUAGCAAAC ....((((...(((......-((((.....))))......)))..)))).....((((((-.((((((.....)))))).))))))------------......(((.......)))... ( -15.30) >DroSec_CAF1 17201 103 + 1 AAUAGAAAUGCACUAACCCU-UUUCAAUUAGGAAUUUCCCAGUAUUUUCAAUGACUUCUG-GCGAAUAAU---UUUUUGGUAGGAG------------AAACAGUGCACAAUCAGCAAAC ....((..((((((...(((-........)))......................((((((-.((((....---..)))).))))))------------....))))))...))....... ( -20.30) >DroSim_CAF1 17573 103 + 1 AAUAGAAAUGCACUAACCCU-UUUCAAUUAGGAAUUUCCCAGUAUUUUCAAUGACUUCUA-GCGAAUAAU---UAUUUGGUAGGAG------------AAACAGUGCAAAAUCAGCAAAC ........((((((...(((-........)))......................((((((-.(((((...---.))))).))))))------------....))))))............ ( -20.90) >DroEre_CAF1 17560 116 + 1 AAUACAAAUGCACUAGCCUU-UUUCAAUUGGGAAUUUCCCAGUAUUCCAAAUGACUGUUGUGAGAACAAU---CAGUUAGUGGGAAUUUGAAUUGGGAAAACUGUGCACCAUCAGCACAC ........(((((...(((.-.((((((((((.....))))))(((((...((((((((((....)))).---))))))...))))).))))..)))......)))))............ ( -36.70) >DroYak_CAF1 17733 93 + 1 AGUAGAAAUGCUCUAGCCUUCUUUCAAUUAGGAAUUUCCCAGUAUUUUCAAUGACCAUUG-GUGAAUAAU---CAUUUGAUGGGAAUUU-----------------------CAGCCUAC .(((((((((((......(((((......)))))......)))))))..(((..((((..-((((....)---)).)..))))..))).-----------------------....)))) ( -17.40) >consensus AAUAGAAAUGCACUAACCCU_UUUCAAUUAGGAAUUUCCCAGUAUUUUCAAUGACUUCUG_GCGAAUAAU___UAUUUGGUAGGAA____________AAACAGUGCACAAUCAGCAAAC ........(((((..........(((.((.(((((........))))).)))))((.(((.................))).))....................)))))............ ( -2.55 = -1.95 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:03 2006