Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,898,366 – 2,898,486 |
Length | 120 |
Max. P | 0.530625 |
Location | 2,898,366 – 2,898,486 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.82 |
Mean single sequence MFE | -32.99 |
Consensus MFE | -23.94 |
Energy contribution | -24.14 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.09 |
Mean z-score | -1.64 |
Structure conservation index | 0.73 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530625 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2898366 120 - 22407834 GACUGACUAACCCUCUUCAUUCACAGUCGCACCCCUCUCUUUCGCACAUCCUACAGUCGUCUCUGUCACGCAACUGGGGCAACUCGGUGCGAUUUCUCAGUGGAAUUCAGGGGGUUCGGU .(((((...(((((((...((((((((((((((..........((.......((((......))))...))....(((....)))))))))))).....)))))....)))))))))))) ( -38.40) >DroSec_CAF1 16965 120 - 1 GACUGACUAACCCUCUUCAUUCACAGUCGCACCUCUCUCUUUCGCACAUCCUCUAGCCGUCUCUGUCACGCAACUGGGGCAACUCGGUGCGAUUUCUCAGUGGAAUUCAGGGGGUUCGGU .(((((...(((((((...((((((((((((((..........((..........)).(((((.((......)).))))).....))))))))).....)))))....)))))))))))) ( -37.20) >DroSim_CAF1 17336 120 - 1 GACUGACUAACCCUCUUCAUUCACAGUCGCACCCCUCUCUUUCGCACAUCCUCUAGCCGUCUCUGUCACGCAACUGGGGCAACUCGGUGCGAUUUCUCAGUGGAAUUCAGGGGGUUCGGC ..((((...(((((((...((((((((((((((..........((..........)).(((((.((......)).))))).....))))))))).....)))))....))))))))))). ( -35.60) >DroEre_CAF1 17342 110 - 1 GACUGACUAACCCUCUUCAUUCACUCACGCAUCCCUCUCUUUCCCACCUGCUCUAUCCAUCUCUGUCACGCAACUGGAGCAACUCGGUGCGAUUUCUCA----------GAGGGUUCGGU .(((((...(((((((............................(((((((((((...................)))))))....)))).((....)))----------))))))))))) ( -24.01) >DroYak_CAF1 17515 110 - 1 GACUGACUAACCCUCUUCAUUCACUGUCGCAACCCUCUCUUUCCCACAUCCUCUAGCCGUCUCUGUCACGCAACUGGGGCAACUCGGUGCGAUUUCUCA----------GAGGGUUCGGU .(((((...(((((((.........(((((.........................((.((.......)))).((((((....))))))))))).....)----------))))))))))) ( -29.74) >consensus GACUGACUAACCCUCUUCAUUCACAGUCGCACCCCUCUCUUUCGCACAUCCUCUAGCCGUCUCUGUCACGCAACUGGGGCAACUCGGUGCGAUUUCUCAGUGGAAUUCAGGGGGUUCGGU .(((((...((((((......................................(((......)))...((((.(((((....)))))))))..................))))))))))) (-23.94 = -24.14 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:00 2006