Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,896,180 – 2,896,291 |
Length | 111 |
Max. P | 0.752879 |
Location | 2,896,180 – 2,896,291 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 70.41 |
Mean single sequence MFE | -26.44 |
Consensus MFE | -15.78 |
Energy contribution | -16.48 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.48 |
Mean z-score | -1.37 |
Structure conservation index | 0.60 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.752879 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2896180 111 + 22407834 GUUAAACUGGACGCUUCCAGCUACGCUCUUCCUCUUUU--CCAUUUUCCCAUCCCCUCUGG-------CCGCCCAGUCGCUACGUUUCCUUGCCACUUCCGGUGGUGAGACACGGAGGUC ......(((((....)))))..................--........((.(((..(((.(-------(((((.(((.((...........)).)))...)))))).)))...))))).. ( -27.10) >DroSec_CAF1 14766 111 + 1 GCUAAACUGGACGCUUCCAGCUACGCUCUUCCCCUUCU--CCCUUUUUCCCUCCCCUCUCU-------CCCACCAGUCACUCCGUUUCCUUGCCACUUCCGGUGGUGAGACAUGGAGGUC ((....(((((....)))))....))............--.........(((((....(((-------((((((.(......((......))......).))))).))))...))))).. ( -27.40) >DroSim_CAF1 15164 113 + 1 GCUAAACUGGACGCUUCCAGCAACGCUCUUCCCCUUUUCCCCCUUUUUCCCUCCCCUCUGC-------CCAACCAGUCACUCCGUUUCUUUGCCACUUCCGGUGGUGAGACAUGGAGGUC ((....(((((....)))))....)).......................(((((...(((.-------.....))).......(((((...(((((.....))))))))))..))))).. ( -26.30) >DroEre_CAF1 15234 117 + 1 GCUAAACUGGACGCUUCCAGCUCCGCUCCUCCCCCUUU--CCCAU-CUCCUUCCCCACUGCCACCCUGCCACUCAGUCACUCUGUAUCCUUGCCACUUCCGGUGGUGAGACACGGGGGUC ((....(((((....)))))....))....(((((...--.....-...........................(((.....)))....((..((((.....))))..))....))))).. ( -29.60) >DroYak_CAF1 15331 110 + 1 GCUAAACUGGACGCUUUCAGCUUAGUUCUUCCCCUUUU----------ACUUCCCCUCGGCCACCAUGCCACUCAGUCACUCUGUUUCCUUGCCACUUCCGGUGGUGAGACACGGAGGUC (((((.(((((....))))).)))))............----------..........(((......))).........((((((...((..((((.....))))..))..))))))... ( -29.80) >DroAna_CAF1 11403 101 + 1 AGCGAACUGGCCGUUUUCUAUCUCAUGCCCACCCAUAG--CCAUCGUCCCAGUCCCUCCGC-------CCUC-------CUCUGGCUCUGAAAAACUUCCGGUGGUGAAUUA--GUCG-C .((((.((((.((....((((.............))))--....))..))))((((.((((-------(...-------....)))...(((....))).)).)).))....--.)))-) ( -18.42) >consensus GCUAAACUGGACGCUUCCAGCUACGCUCUUCCCCUUUU__CCCUUUUUCCAUCCCCUCUGC_______CCACCCAGUCACUCCGUUUCCUUGCCACUUCCGGUGGUGAGACACGGAGGUC ((....(((((....)))))....)).....................................................((((((...((((((((.....))))))))..))))))... (-15.78 = -16.48 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:57 2006