Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,893,375 – 2,893,483 |
Length | 108 |
Max. P | 0.999137 |
Location | 2,893,375 – 2,893,483 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.54 |
Mean single sequence MFE | -26.80 |
Consensus MFE | -22.59 |
Energy contribution | -23.71 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.04 |
Mean z-score | -2.91 |
Structure conservation index | 0.84 |
SVM decision value | 3.39 |
SVM RNA-class probability | 0.999137 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2893375 108 + 22407834 UGGCCACGCUGCCAACUGUGAAUCAUCAGAGUGGGCCACCUUGUCCUUUCACC-----UCAAUC-------GCAUUGGCCCACUUUAACUAUUGACCCACACACCUAAUUGAUAUGCCUC ((((......))))..((((..(((..(((((((((((...(((.........-----......-------))).)))))))))))......)))..))))................... ( -26.96) >DroSec_CAF1 12025 108 + 1 UGGCCACGCUGCCAACUGUGAAUCAUCAGAGUGGGCCACCUUGCCCUUUCACC-----UCAAUC-------GCAUUGGCCCACUUAAACUAUUGACCCACACACCUAAUUGAUAUGCCUC ((((......))))..((((..(((..(((((((((((...(((.........-----......-------))).)))))))))....))..)))..))))................... ( -28.06) >DroSim_CAF1 12357 108 + 1 UGGCCACGCUGCCAACUGUGAAUCAUCAGAGUGGGCCACCUUGCCCUUUCACC-----UCAAUC-------GCAUUGGCCCACUUAAACUAUUGACCCACACACCUAAUUGAUAUGCCUC ((((......))))..((((..(((..(((((((((((...(((.........-----......-------))).)))))))))....))..)))..))))................... ( -28.06) >DroEre_CAF1 12270 113 + 1 UGGCCACGCUGCCAACUGUGAAUCAUCA--GUGGGCCACCUUGCCAUUUCACC-----UCCAUCGCAUUGGCCAUUGGCCCACUUAAACUAUUGACCCACACACCUAAUUGAUAUGCCUC ((((......))))..((((..(((..(--((((((((....((((.......-----..........))))...)))))))))........)))..))))................... ( -28.93) >DroYak_CAF1 12408 111 + 1 UGGCCACGCUGCCAACUGUGAAUCAUCA--GUGGGCCACCUUGCCCUUUCACCUCACCUCCAUC-------CCAUUGGCCCACUUAAACUAUUGACCCACACACCUAAUUGAUAUGCCUC ((((......))))..((((..(((..(--((((((((..........................-------....)))))))))........)))..))))................... ( -22.01) >consensus UGGCCACGCUGCCAACUGUGAAUCAUCAGAGUGGGCCACCUUGCCCUUUCACC_____UCAAUC_______GCAUUGGCCCACUUAAACUAUUGACCCACACACCUAAUUGAUAUGCCUC ((((......))))..((((..(((...((((((((((...(((...........................))).)))))))))).......)))..))))................... (-22.59 = -23.71 + 1.12)
Location | 2,893,375 – 2,893,483 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.54 |
Mean single sequence MFE | -36.74 |
Consensus MFE | -30.91 |
Energy contribution | -31.71 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -2.34 |
Structure conservation index | 0.84 |
SVM decision value | 2.54 |
SVM RNA-class probability | 0.995065 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2893375 108 - 22407834 GAGGCAUAUCAAUUAGGUGUGUGGGUCAAUAGUUAAAGUGGGCCAAUGC-------GAUUGA-----GGUGAAAGGACAAGGUGGCCCACUCUGAUGAUUCACAGUUGGCAGCGUGGCCA ..((((((((.....)))))((((((((.(((....(((((((((....-------..(((.-----..........)))..)))))))))))).)))))))).............))). ( -34.40) >DroSec_CAF1 12025 108 - 1 GAGGCAUAUCAAUUAGGUGUGUGGGUCAAUAGUUUAAGUGGGCCAAUGC-------GAUUGA-----GGUGAAAGGGCAAGGUGGCCCACUCUGAUGAUUCACAGUUGGCAGCGUGGCCA ..((((((((.....)))))((((((((.(((....(((((((((.(((-------..((..-----.....))..)))...)))))))))))).)))))))).............))). ( -38.80) >DroSim_CAF1 12357 108 - 1 GAGGCAUAUCAAUUAGGUGUGUGGGUCAAUAGUUUAAGUGGGCCAAUGC-------GAUUGA-----GGUGAAAGGGCAAGGUGGCCCACUCUGAUGAUUCACAGUUGGCAGCGUGGCCA ..((((((((.....)))))((((((((.(((....(((((((((.(((-------..((..-----.....))..)))...)))))))))))).)))))))).............))). ( -38.80) >DroEre_CAF1 12270 113 - 1 GAGGCAUAUCAAUUAGGUGUGUGGGUCAAUAGUUUAAGUGGGCCAAUGGCCAAUGCGAUGGA-----GGUGAAAUGGCAAGGUGGCCCAC--UGAUGAUUCACAGUUGGCAGCGUGGCCA ..((((((((.....)))))((..((((((((((..(((((((((...((((...((.....-----..))...))))....))))))))--)...))))....)))))).))...))). ( -39.20) >DroYak_CAF1 12408 111 - 1 GAGGCAUAUCAAUUAGGUGUGUGGGUCAAUAGUUUAAGUGGGCCAAUGG-------GAUGGAGGUGAGGUGAAAGGGCAAGGUGGCCCAC--UGAUGAUUCACAGUUGGCAGCGUGGCCA ...(((((((.....))))))).(((((.........((..((((((..-------(.((((.....(((....((((......))))))--).....))))).)))))).)).))))). ( -32.50) >consensus GAGGCAUAUCAAUUAGGUGUGUGGGUCAAUAGUUUAAGUGGGCCAAUGC_______GAUUGA_____GGUGAAAGGGCAAGGUGGCCCACUCUGAUGAUUCACAGUUGGCAGCGUGGCCA ..((((((((.....)))))((((((((.(((....(((((((((.((.............................))...)))))))))))).)))))))).............))). (-30.91 = -31.71 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:56 2006