Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,891,611 – 2,891,706 |
Length | 95 |
Max. P | 0.999517 |
Location | 2,891,611 – 2,891,706 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.37 |
Mean single sequence MFE | -28.01 |
Consensus MFE | -20.40 |
Energy contribution | -20.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.05 |
Structure conservation index | 0.73 |
SVM decision value | 3.68 |
SVM RNA-class probability | 0.999517 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2891611 95 + 22407834 UUUUCUUGGCCUGCUCUUUUCCGCCAACUCAGACGGUUGGCUGAAAGGCCACC--------------CACCGC-----------CCCCAUUUUCAGCCAUCCGCCGUCGUCUGUUGUCCC .....(((((............)))))....((((((((((((((((((....--------------....))-----------).....)))))))))...))))))............ ( -29.20) >DroSim_CAF1 10569 95 + 1 CUUUCUUGGCCUGCUCUUUUCCGCCAACUCAGACGGUUGGCUGAAAGGCCACC--------------CACCGC-----------CCCCAUUUUCAGCCAUCCGCCGCCGUCUGUUGUCCC .....(((((............)))))..((((((((((((((((((((....--------------....))-----------).....)))))))))......))))))))....... ( -31.00) >DroEre_CAF1 10528 120 + 1 UUUUCUUGGCCUGCUCUUUUCCGCCAACUCAGACGGUUGGCUGAAAGGCCACCAGCCACCCAACACCCACCACCACCCACCAGCACCCAUUUUCAAACAUCCGCUGUCGUCUGUCGUCCC .....(((((............)))))..(((((((.((((((.........)))))).))...................((((..................))))..)))))....... ( -26.07) >DroYak_CAF1 10614 100 + 1 UUUUCUUGGCCUGCUCUUUUCCGCCAACUCAGACGGUUGGCUGAAAGGCCACCACCCACCCACUACCCACCGCC----------CCCCAUUUUCAGCCAUCCGCUG----------UCCC .....(((((............)))))..(((.(((.((((((((((((......................)))----------......))))))))).))))))----------.... ( -25.75) >consensus UUUUCUUGGCCUGCUCUUUUCCGCCAACUCAGACGGUUGGCUGAAAGGCCACC______________CACCGC___________CCCCAUUUUCAGCCAUCCGCCGUCGUCUGUUGUCCC ......((((((......(((.(((((((.....))))))).)))))))))..................................................................... (-20.40 = -20.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:47 2006