Locus 1004

Sequence ID 2L_DroMel_CAF1
Location 2,891,229 – 2,891,335
Length 106
Max. P 0.999353
window1608

overview

Window 8

Location 2,891,229 – 2,891,335
Length 106
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.83
Mean single sequence MFE -27.40
Consensus MFE -23.72
Energy contribution -24.52
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -2.67
Structure conservation index 0.87
SVM decision value 3.53
SVM RNA-class probability 0.999353
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2891229 106 - 22407834
UGGCCGCCGCAGCUCAUUGACAAUAAAAAAUGAGAAAACGGGGAAAGAACC--------------CAGAACCGGAAAGAAAACGGUUCGCUUCGCAGAAAUGGGAAAAGUUUUUACCAGA
(((((.(((...((((((..........))))))....))))).((((((.--------------..((((((.........))))))..(((.((....)).)))..)))))).))).. ( -30.60)
>DroSec_CAF1 9979 106 - 1
UGGCCGCCGCAGCUCAUUGACAAUAAAAAAUGAGAAAACGGGGAAAGAACC--------------CAGAACCGGAAAGAAAACGGUUCGCUUCGCAGAAAUGAGAAAAGUUUUUAACAGA
...((.(((...((((((..........))))))....))))).((((((.--------------..((((((.........))))))..(((.((....)).)))..))))))...... ( -27.00)
>DroSim_CAF1 10181 106 - 1
UGGCCGCCGCAGCUCAUUGACAAUAAAAAAUGAGAAAACGGGGAAAGAACC--------------CAGAACCGGAAAGAAAACGGUUCGCUUCGCAGAAAUGAGAAAAGUUUUUAACAGA
...((.(((...((((((..........))))))....))))).((((((.--------------..((((((.........))))))..(((.((....)).)))..))))))...... ( -27.00)
>DroEre_CAF1 10153 120 - 1
UGGCCGCCGCAGCUCAUUGACAAUAAAAAAUGAGAAAACGGGAAAAGAACCCACAACCUAGAAUCCAGAACCGGAAAGAAAACGGUUCGCUUCGCAGAAAUGAGAAAAGUUUUAAGCAGA
........((..((((((..........))))))((((((((.......)))...............((((((.........))))))..(((.((....)).)))..)))))..))... ( -26.20)
>DroYak_CAF1 10253 106 - 1
UGGCCGCCGCAGCUCAUUGACAAUAAAAAAUGAGAAAACGGGAAAAGAACC--------------CAGAACCGGAAAGAAAACGGUUCGCUUCGCAGAAAUGAGAAAAGUUUUAAGCAGA
........((..((((((..........))))))((((((((.......))--------------).((((((.........))))))..(((.((....)).)))..)))))..))... ( -26.20)
>consensus
UGGCCGCCGCAGCUCAUUGACAAUAAAAAAUGAGAAAACGGGGAAAGAACC______________CAGAACCGGAAAGAAAACGGUUCGCUUCGCAGAAAUGAGAAAAGUUUUUAACAGA
...((.(((...((((((..........))))))....))))).((((((.................((((((.........))))))..(((.((....)).)))..))))))...... (-23.72 = -24.52 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:46 2006