Locus 1002

Sequence ID 2L_DroMel_CAF1
Location 2,889,460 – 2,889,560
Length 100
Max. P 0.655443
window1605

overview

Window 5

Location 2,889,460 – 2,889,560
Length 100
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 91.50
Mean single sequence MFE -26.08
Consensus MFE -19.74
Energy contribution -20.58
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -1.74
Structure conservation index 0.76
SVM decision value 0.26
SVM RNA-class probability 0.655443
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2889460 100 + 22407834
CUUUUGUGGCAUUUUGUUGUUGCAGCUGGAAGAAUGUUUCCCGAAAAGGGGGUU-----UUCGGAAGAUUCCAAUCUGCCAUCGAAACCAAAUCUAAAAUUAACU
.((((((((((..(((..(((....(((((((.....(((((.....)))))))-----)))))..)))..)))..))))).))))).................. ( -24.70)
>DroSec_CAF1 8238 101 + 1
CUUUUGUGGCAUUUUGUUGUUGCAGCUGGAAGAAUGUUUCCCGUAAAGGGGUUUU----UUUUGAAGAUUCCAAUCUGCCAUCGAAACCAAAUCUAAAAUUAACA
.((((((((((..(((..(((....(..(((((((....(((.....))))))))----))..)..)))..)))..))))).))))).................. ( -22.00)
>DroSim_CAF1 8231 105 + 1
CUUUUGUGGCAUUUUGUUGUUGCAGCUGGAAGAAUGUUUCCCGUAAAGGGGGUUUUUUUUUUGGAAGAUUCCAAUCUGCCAUCGAUACCAAAUCUAAAAUUAACA
...((((((((..(((..(((....(..((((((...(((((.....)))))...))))))..)..)))..)))..))))).))).................... ( -26.80)
>DroEre_CAF1 8330 104 + 1
CUUUUGUGGCAUUUUGUUGUUGCAGCUGGAAGAAUAUUUACCGAAAGGGGGUUU-UUUUUUUGGAAGAUUCCAAUCUGCCAUCGAAACGAAAUCUAAAAUUAACU
.((((((((((..(((..(((....(..((((((...(..((....))..)...-))))))..)..)))..)))..))))).))))).................. ( -27.00)
>DroYak_CAF1 8429 100 + 1
CUUUUGUGGCAUUUUGUUGUUGCAGCUGGAAGAAUAUUUCCCGAAAGGGGGGUU-----UUUGGAAGAUUCCAAUAUGCCAUCGAAACCGAAUCUAAAAUUAACU
.(((((((((((.(((..(((....(..(((....((..(((....)))..)))-----))..)..)))..))).)))))).))))).................. ( -29.90)
>consensus
CUUUUGUGGCAUUUUGUUGUUGCAGCUGGAAGAAUGUUUCCCGAAAAGGGGGUU_____UUUGGAAGAUUCCAAUCUGCCAUCGAAACCAAAUCUAAAAUUAACU
.((((((((((..(((..(((....(((((.......(((((.....))))).......)))))..)))..)))..))))).))))).................. (-19.74 = -20.58 +   0.84) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:42 2006