| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,889,303 – 2,889,400 |
| Length | 97 |
| Max. P | 0.979924 |
| Location | 2,889,303 – 2,889,400 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 90.34 |
| Mean single sequence MFE | -27.86 |
| Consensus MFE | -21.97 |
| Energy contribution | -21.61 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.85 |
| SVM RNA-class probability | 0.979924 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2889303 97 + 22407834 UUUGUAUGUGCAUAUG----------AGAUAAGUGCAUCAGAAUGUGUACGUGAGUGUGUGUGUGCUGCAAUUGCGAUCAACAGCUGUUGCAGGGAGAGCAAAAGAG-- ....(((((((((((.----------.(((......)))...)))))))))))....(((...(.(((((((.((........)).))))))).)...)))......-- ( -27.90) >DroSec_CAF1 8081 97 + 1 UUUGUAUGUGCAUAUG----------AGAUAAGUGCAUCAGAAUGUGUACGUGAGUGUGUGUGUGCUGCAAUUGCGAUCAACAGCUGUUGCAGGGAGAGCAAAAGAG-- ....(((((((((((.----------.(((......)))...)))))))))))....(((...(.(((((((.((........)).))))))).)...)))......-- ( -27.90) >DroSim_CAF1 8074 97 + 1 UUUGUAUGUGCAUAUG----------AGAUAAGUGCAUCAGAAUGUGUACGUGAGUGUGUGUGUGCUGCAAUUGCGAUCAACAGCUGUUGCAGGGAGAGAAAAAGAG-- ...(((((..(((((.----------.(....((((((......)))))).)..)))))..)))))((((((.((........)).))))))...............-- ( -25.70) >DroEre_CAF1 8167 103 + 1 UUUGUAUGUGCAUGUGCAUAUAUGUAAGAUAAGUGCAUCAGAAUGUGUAUGUGAGUG----UGUGCUGCAAUUGCGAUCAACAGCUGUUGCAGGGAGAGCAAAAGAG-- ((..((((..(((((((((.(((.....))).))))))....)))..))))..))((----(.(.(((((((.((........)).))))))).)...)))......-- ( -29.70) >DroYak_CAF1 8254 95 + 1 UUUGUAUGUGCAUAUG----------AGAUAAGUGCAUCAGAAUGUGCAUGUGAGUG----CGUGCUGCAAUUGCGAUCAACAGCUGUUGCAGGGGGAGCAAAAGAGAG .(..((((..(((.((----------(..........)))..)))..))))..)((.----(.(.(((((((.((........)).))))))).).).))......... ( -28.10) >consensus UUUGUAUGUGCAUAUG__________AGAUAAGUGCAUCAGAAUGUGUACGUGAGUGUGUGUGUGCUGCAAUUGCGAUCAACAGCUGUUGCAGGGAGAGCAAAAGAG__ (((((((((((((((...........................)))))))))).............(((((((.((........)).))))))).....)))))...... (-21.97 = -21.61 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:41 2006