Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 316,317 – 316,413 |
Length | 96 |
Max. P | 0.599717 |
Location | 316,317 – 316,413 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 81.57 |
Mean single sequence MFE | -22.39 |
Consensus MFE | -15.42 |
Energy contribution | -14.66 |
Covariance contribution | -0.76 |
Combinations/Pair | 1.21 |
Mean z-score | -1.64 |
Structure conservation index | 0.69 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599717 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 316317 96 + 22407834 AAGUAAAAAGGAGGA-------------ACGCAAUGGAACAGCUGUGAGGCGAGCGUAGCAUGGAAAUGAGGAA-------AAUCGAGCAGCGUCUCUUCCAUUUUUCAUUUUACU .(((((((.((((..-------------....(((((((..(((((....(((...(..(((....)))..)..-------..))).))))).....))))))))))).))))))) ( -24.40) >DroSec_CAF1 20556 91 + 1 AAGUAAAAAGAGAGA-------------AAGAAAUGGAACAGCUGUGAGGCGAG-----AAUGGAAAUGAGGAA-------AAUCGAGCAGCGUCUUCUCCAUUUUUCAUUUUACU .(((((((.((((((-------------..((...(((...(((((....(((.-----...............-------..))).))))).)))..))..)))))).))))))) ( -21.07) >DroSim_CAF1 22346 91 + 1 AAGUAAAAAGAAAGA-------------AAGAAAUGGAACAGCUGUGGGGCGAG-----AAUGGAAAUGAGGAA-------AAUCGAGCAGCGUCUUCUCCAUUUUUCAUUUUACU .(((((((.((((((-------------..((...(((...(((((....(((.-----...............-------..))).))))).)))..))..)))))).))))))) ( -20.97) >DroEre_CAF1 21837 109 + 1 AAGUCAAAAGAAGGAAAGCAAAGAAGGAAAGCAAUGGAAGAGCUGUGAGACGAGAGUAGCAUGGAAAUGAGGAA-------AAUCGAGCAGCGUCUCCCCCAUUUUUCAUUUCACU ......................((((((((..(((((.((((((((....(((...(..(((....)))..)..-------..))).))))).)))...))))))))).))))... ( -22.20) >DroYak_CAF1 22384 106 + 1 AAGUAAAAAGAAGGAACGU---------AAGAAAUGGAAGAGCUGUGAGACGAGCGUAGCAUGGAAAUGAGGAAAAUGGAAAAUCGAGCAGCGUCUCC-CCAUUUUUCAUUUUACU .(((((((.((((((.(..---------..)...(((.((((((((..(((.(...(..(((....)))..)....).)....))..))))).)))..-))))))))).))))))) ( -23.30) >consensus AAGUAAAAAGAAGGA_____________AAGAAAUGGAACAGCUGUGAGGCGAG_GUAGCAUGGAAAUGAGGAA_______AAUCGAGCAGCGUCUCCUCCAUUUUUCAUUUUACU .(((((((.((((((....................(((...(((((....(((..............................))).)))))...)))....)))))).))))))) (-15.42 = -14.66 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:42 2006