Results for CNB 154812-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


154812_ENSG00000180828_HUMAN_9464_9545/1-84        AGAAGACTCGCCTGTTGGGACAGCGC-T-TTCTACCCAATCAGGTTAACGTTTTAATTAA
154812_ENSMUSG00000049424_MOUSE_9502_9583/1-84     AGAAGACTCGCCTGTTGGGACAGCGC-T-TTCTACCCAATCAGGTTAACGTTTTAATTAA
154812_SINFRUG00000146103_FUGU_9519_9600/1-84      AAGAGAGGCACCTCTCCCCCCTTCACAC-CTTCGCCCAATCAGGTTAACGTTGTAATTAA
154812_ENSDARG00000025861_ZEBRAFISH_9583_9665/1-84 -GAAGATTCGCCTATCGGGAGTGAGCGCGCGCCACCCAATCAGGTTAACGTTTTAATTAA
                                                      ***  * *** *          *        ****************** *******


154812_ENSG00000180828_HUMAN_9464_9545/1-84        TAGGATTAAAACGGTAACAAACAA
154812_ENSMUSG00000049424_MOUSE_9502_9583/1-84     TAGGATTAAAACGGTAACAAACAA
154812_SINFRUG00000146103_FUGU_9519_9600/1-84      CGACATTTTCACGATGACAAACA-
154812_ENSDARG00000025861_ZEBRAFISH_9583_9665/1-84 TGGGATTAAAACGGTAACAAACAA
                                                       ***   *** * ******* 

154812-rev.aln

RNAz output


############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 84
 Mean pairwise identity:  76.00
 Mean single sequence MFE: -18.99
 Consensus MFE: -11.96
 Energy contribution: -11.27
 Covariance contribution:  -0.69
 Mean z-score:  -1.98
 Structure conservation index:   0.63
 SVM decision value:   1.12
 SVM RNA-class probability: 0.917999
 Prediction: RNA

######################################################################

>154812_ENSG00000180828_HUMAN_9464_9545/1-84
AGAAGACUCGCCUGUUGGGACAGCGCUUUCUACCCAAUCAGGUUAACGUUUUAAUUAAUAGGAUUAAAACGGUAACAAACAA
.........((((((((((.............))))).)))))...((((((((((.....))))))))))........... ( -20.92)
>154812_ENSMUSG00000049424_MOUSE_9502_9583/1-84
AGAAGACUCGCCUGUUGGGACAGCGCUUUCUACCCAAUCAGGUUAACGUUUUAAUUAAUAGGAUUAAAACGGUAACAAACAA
.........((((((((((.............))))).)))))...((((((((((.....))))))))))........... ( -20.92)
>154812_SINFRUG00000146103_FUGU_9519_9600/1-84
AAGAGAGGCACCUCUCCCCCCUUCACACCUUCGCCCAAUCAGGUUAACGUUGUAAUUAACGACAUUUUCACGAUGACAAACA
..(((((....)))))......((((......(((......)))....(((((.....)))))........).)))...... ( -13.10)
>154812_ENSDARG00000025861_ZEBRAFISH_9583_9665/1-84
GAAGAUUCGCCUAUCGGGAGUGAGCGCGCGCCACCCAAUCAGGUUAACGUUUUAAUUAAUGGGAUUAAAACGGUAACAAACAA
........((((....((.(((.((....)))))))....))))...((((((((((.....))))))))))........... ( -21.00)
>consensus
AGAAGACUCGCCUGUCGGGACAGCGC_C_CUCCACCCAAUCAGGUUAACGUUUUAAUUAAUAGGAUUAAAACGGUAACAAACAA
....(((......)))...........................((((.((((((((((.....)))))))))).))))...... (-11.96 = -11.27 +  -0.69) 

154812-rev.rnaz

RNAalifold consensus structure

Secondary Structure Dot Plot
PS | PDF PS | PDF
Stefan Washietl
Last modified: Thu Aug 12 14:35:44 CEST 2004