############################################## # TABLE: Genomic location of snoRNA_E1/E2/E3 # ############################################## # --------------------------------------------------------------- # snoRNA Length Location Strand Start End Source # --------------------------------------------------------------- Hs_1_E1_1 207 chr1 + 28654493 28654699 UCSC0405 Hs_1_E1_2 205 chr1 + 28655686 28655890 UCSC0405 Hs_3_E2_1 149 chr3 + 39424886 39425034 UCSC0405 Hs_3_E2_2 154 chr3 + 39427549 39427702 UCSC0405 Hs_3_E3_1 126 chr3 + 187986813 187986938 UCSC0405 Hs_3_E3_2 135 chr3 + 187987790 187987924 UCSC0405 Pt_1_E1_1 205 chr1 + 29224912 29225116 UCSC1103 Pt_1_E1_2 202 chr1 + 29226094 29226295 UCSC1103 Pt_2_E3_1 124 chr2 + 192078762 192078885 UCSC1103 Pt_2_E3_2 135 chr2 + 192079738 192079872 UCSC1103 Mm_4_E1_1 189 chr4 + 130937097 130937302 UCSC0405 Mm_4_E1_2 205 chr4 + 130937550 130937754 UCSC0405 Mm_9_E2_1 155 chr9 + 120114294 120114448 UCSC0405 Mm_9_E1 206 chr9 + 120114861 120115066 UCSC0405 Mm_9_E2_2 145 chr9 + 120115927 120116071 UCSC0405 Mm_16_E3_1 129 chr16 + 22954374 22954502 UCSC0405 Mm_16_E3_2 133 chr16 + 22955293 22955425 UCSC0405 Rn_8_E2_1 154 chr8 + 125120943 125121096 UCSC0306 Rn_8_E1 207 chr8 + 125121510 125121716 UCSC0306 Rn_8_E2_2 155 chr8 + 125122687 125122841 UCSC0306 Rn_11_E3_1 129 chr11 - 80012055 80012183 UCSC0306 Rn_11_E3_2 115 chr11 - 80010709 80010823 UCSC0306 Cf_2_E1_1 202 chr2 - 72633599 72633800 UCSC0604 Cf_2_E1_2 203 chr2 - 72632669 72632871 UCSC0604 Cf_23_E2_1 150 chr23 + 12080172 12080321 UCSC0604 Cf_23_E2_2 155 chr23 + 12082743 12082897 UCSC0604 Cf_34_E3_1 115 chr34 + 19473959 19474073 UCSC0604 Cf_34_E3_2 117 chr34 + 19475059 19475175 UCSC0604 Gg_E1 161 chrUn - 86821026 86821186 UCSC0204 Gg_2_E2_1 156 chr2 - 43447103 43447260 UCSC0204 Gg_2_E2_2 153 chr2 - 43445902 43446053 UCSC0204 Gg_9_E3_1 131 chr9 + 15488665 15488795 UCSC0204 Xl_E1_1 221 X71081.1 -- 1462 1682 GenBank-nr/041108 Xl_E1_2 223 X71081.1 -- 3489 3711 GenBank-nr/041108 Xl_E1_3 222 X71081.1 -- 4425 4646 GenBank-nr/041108 Xl_E1_4 219 X71081.1 -- 6865 7083 GenBank-nr/041108 Xl_E1_5 222 X71081.1 -- 9191 9412 GenBank-nr/041108 Xl_E1_6 220 X71081.1 -- 12459 12678 GenBank-nr/041108 Xt_E2_1 153 scaffold_138 - 1195579 1195731 JGIv2.0 Xt_E2_2n 155 scaffold_138 - 1194241 1194392 JGIv2.0 Xt_E3_1n 125 scaffold_1440 + 294800 294924 JGIv2.0 Xt_E3_2n 131 scaffold_1440 + 295754 295884 JGIv2.0 Dr_20_E1_1 221 chr20 + 12598805 12599025 UCSC1103 Dr_20_E1_2 220 chr20 + 12599627 12599846 UCSC1103 Dr_20_E1_3 221 chr20 + 12600284 12600504 UCSC1103 Dr_20_E1_4 220 chr20 + 12600828 12601047 UCSC1103 Dr_6_E2_1 156 chr6 + 1698117 1698272 UCSC1103 Dr_6_E2_2 156 chr6 + 1698605 1698760 UCSC1103 Dr_25_E3_1 134 chrUn - 261876700 261876833 UCSC1103 Dr_25_E3_2 134 chrUn - 261872732 261872865 UCSC1103 Dr_25_E3_3 134 chrUn - 261870957 261871090 UCSC1103 Dr_25_E3_4 135 chrUn - 261868340 261868474 UCSC1103 Dr_25_E3_5 134 chrUn - 261865055 261865188 UCSC1103 Dr_25_E3_6 135 chrUn - 261861514 261861648 UCSC1103 Tr_E1_1 217 X94942.1 -- 1504 1720 GenBank-nr/2004-07-11 Tr_E1_2 215 X94942.1 -- 2086 2300 GenBank-nr/2004-07-11 Tr_E1_3 217 X94942.1 -- 2747 2963 GenBank-nr/2004-07-11 Tr_E1_4 218 X94942.1 -- 3702 3919 GenBank-nr/2004-07-11 Tr_E2_1 155 scaffold_3749 - 293978196 293978350 UCSC0802 Tr_E3_1 129 scaffold_149 - 58907665 58907793 UCSC0802 Tr_E3_2 135 scaffold_149 - 58907295 58907429 UCSC0802 Tn_E1_1 211 chr14 - 9590476 9590685 UCSC0204 Tn_E1_2 211 chr14 - 9589912 9590122 UCSC0204 Tn_E1_3 211 chr14 - 9589256 9589466 UCSC0204 Tn_E1_4 214 chr14 - 9588574 9588786 UCSC0204 Tn_E3_1 136 chrUn_random - 43648690 43648825 UCSC0204 Tn_E3_2 135 chrUn_random - 43648291 43648425 UCSC0204