######################################################### # TABLE: Genomic location of snoRNA_E1/E2/E3 host genes # ######################################################### # ---------------------------------------------------------------------------------------- # snoRNA Host_gene Accession Location Strand Start End Location_within_gene Source # ---------------------------------------------------------------------------------------- Hs_1_E1_1 CHC1 BC007300 chr1 + 28653184 28686118 in1 UCSC0504 Hs_1_E1_2 CHC1 BC007300 chr1 + 28653184 28686118 in2 UCSC0504 Hs_3_E2_1 LAMR1 BT007219 chr3 + 39424148 39428862 in1 UCSC0504 Hs_3_E2_2 LAMR1 BT007219 chr3 + 39424148 39428862 in3 UCSC0504 Hs_3_E3_1 EIF4A2 BC015842 chr3 + 1879806 187990382 in6 UCSC0504 Hs_3_E3_2 EIF4A2 BC015842 chr3 + 1879806 187990382 in8 UCSC0504 Pt_1_E1_1 homolCHC1 ENSPTRT00000000842.1 chr1 + 29223615 29256557 in1 UCSC1103Ensemblpred Pt_1_E1_2 homolCHC1 ENSPTRT00000000842.1 chr1 + 29223615 29256557 in2 UCSC1103Ensemblpred Pt_2_E3_1 homolEIF4A2 ENSPTRT00000029298.1 chr2 + 192076026 192082345 in6 UCSC1103Ensemblpred Pt_2_E3_2 homolEIF4A2 ENSPTRT00000029298.1 chr2 + 192076026 192082345 in8 UCSC1103Ensemblpred Mm_4_E1_1 U17hostgene AJ006837 chr4 + 130936444 130938143 in1 UCSC0504 Mm_4_E1_2 U17hostgene AJ006837 chr4 + 130936444 130938143 in2 UCSC0504 Mm_9_E2_1 LAMR1/rps4 J02870 chr9 + 120113301 120117126 in2 UCSC0504 Mm_9_E1 LAMR1/rps4 J02870 chr9 + 120113301 120117126 in3 UCSC0504 Mm_9_E2_2 LAMR1/rps4 J02870 chr9 + 120113301 120117126 in4 UCSC0504 Mm_16_E3_1 EIF4A2 X12507 chr16 + 22951748 22957940 in6 UCSC0504 Mm_16_E3_2 EIF4A2 X12507 chr16 + 22951748 22957940 in8 UCSC0504 Rn_8_E2_1 LAMR1/rps4 D25224 chr8 + 125119975 125123833 in3 UCSC0306 Rn_8_E1 LAMR1/rps4 D25224 chr8 + 125119975 125123833 in2 UCSC0306 Rn_8_E2_2 LAMR1/rps4 D25224 chr8 + 125119975 125123833 in4 UCSC0306 Rn_11_E3_1 homolEIF4A2 ENSRNOT00000002484.2 chr11 - 80008816 80014753 in6 UCSC0306ensemblpred Rn_11_E3_2 homolEIF4A2 ENSRNOT00000002484.2 chr11 - 80008816 80014753 in8 UCSC0306ensemblpred Cf_2_E1_1 --- CO683273 chr2 - 72631984 72634717 in1 UCSC0604 Cf_2_E1_2 --- CO683273 chr2 - 72631984 72634717 in2 UCSC0604 Cf_23_E2_1 --- BM538800 chr23 + 12078964 12083430 in1 UCSC0604 Cf_23_E2_2 --- BM538800 chr23 + 12078964 12083430 in3 UCSC0604 Cf_34_E3_1 --- --- --- --- --- --- --- --- Cf_34_E3_2 --- --- --- --- --- --- --- --- Gg_E1 --- CR391392 chrUn - 86820083 86821499 in1 UCSC0204 Gg_2_E2_1 homolRSP4 ENSGALT00000019495.1 chr2 - 43444268 43448941 in3 UCSC0204ensemblpred Gg_2_E2_2 homolRSP4 ENSGALT00000019495.1 chr2 - 43444268 43448941 in4 UCSC0204ensemblpred Gg_9_E3_1 EIF4A2 NM_204549 chr9 + 15484694 15491549 in8 UCSC0204 Xl_E1_1 XlrpS8a X71081 -- -- -- -- in1 GenBank-nr/041108 Xl_E1_2 XlrpS8a X71081 -- -- -- -- in2 GenBank-nr/041108 Xl_E1_3 XlrpS8a X71081 -- -- -- -- in3 GenBank-nr/041108 Xl_E1_4 XlrpS8a X71081 -- -- -- -- in4 GenBank-nr/041108 Xl_E1_5 XlrpS8a X71081 -- -- -- -- in5 GenBank-nr/041108 Xl_E1_6 XlrpS8a X71081 -- -- -- -- in6 GenBank-nr/041108 Xt_E2_1 -- NM_203737.1 scaffold_138 - 1191731 1197854 in2 JGIv2.0 Xt_E2_2n -- NM_203737.1 scaffold_138 - 1191731 1197854 in3 JGIv2.0 Xt_E3_1n homoloEIF4a2 fgenesh.C_scaffold_1440000006 scaffold_1440 + 286256 298145 in8 JGIv2.0 Xt_E3_2n homoloEIF4a2 fgenesh.C_scaffold_1440000006 scaffold_1440 + 286256 298145 in10 JGIv2.0 Dr_20_E1_1 RPS7 NM_200752 chr20 + 12597278 12601358 in2 UCSC1103 Dr_20_E1_2 RPS7 NM_200752 chr20 + 12597278 12601358 in3 UCSC1103 Dr_20_E1_3 RPS7 NM_200752 chr20 + 12597278 12601358 in4 UCSC1103 Dr_20_E1_4 RPS7 NM_200752 chr20 + 12597278 12601358 in5 UCSC1103 Dr_6_E2_1 LAMR1 NM_201052 chr6 + 1696133 1703040 in1 UCSC1103 Dr_6_E2_2 LAMR1 NM_201052 chr6 + 1696133 1703040 in2 UCSC1103 Dr_25_E3_1 rplp0 NM_131580 chrUn - 261858320 261878456 in1 UCSC1103 Dr_25_E3_2 rplp0 NM_131580 chrUn - 261858320 261878456 in2 UCSC1103 Dr_25_E3_3 rplp0 NM_131580 chrUn - 261858320 261878456 in4 UCSC1103 Dr_25_E3_4 rplp0 NM_131580 chrUn - 261858320 261878456 in5 UCSC1103 Dr_25_E3_5 rplp0 NM_131580 chrUn - 261858320 261878456 in5 UCSC1103 Dr_25_E3_6 rplp0 NM_131580 chrUn - 261858320 261878456 in6 UCSC1103 Tr_E1_1 rps7 X94942.1 -- -- -- -- in3 GenBank-nr/2004-07-11 Tr_E1_2 rps7 X94942.1 -- -- -- -- in4 GenBank-nr/2004-07-11 Tr_E1_3 rps7 X94942.1 -- -- -- -- in5 GenBank-nr/2004-07-11 Tr_E1_4 rps7 X94942.1 -- -- -- -- in6 GenBank-nr/2004-07-11 Tr_E2_1 homoloLAMR1 SINFRUT00000144334 scaffold_3749 - 2 1388 in2 UCSC0802 Tr_E3_1 homoloRPLP0 SINFRUT00000139433 scaffold_149 - 216583 218433 in2 UCSC0802 Tr_E3_2 homoloRPLP0 SINFRUT00000139433 scaffold_149 - 216583 218433 in3 UCSC0802 Tn_E1_1 homoloRPS7 CR673668 chr14 - 9588384 9591604 in3 UCSC0204 Tn_E1_2 homoloRPS7 CR673668 chr14 - 9588384 9591604 in4 UCSC0204 Tn_E1_3 homoloRPS7 CR673668 chr14 - 9588384 9591604 in5 UCSC0204 Tn_E1_4 homoloRPS7 CR673668 chr14 - 9588384 9591604 in6 UCSC0204 Tn_E3_1 homoloRPLP0 GSTENT00020793001 chrUn_random - 43647337 43649194 in1 UCSC0204genscope Tn_E3_2 homoloRPLP0 GSTENT00020793001 chrUn_random - 43647337 43649194 in2 UCSC0204genscope