Blast parameters used in genome wide searches for mir17 family members

Only parameters that have been changed from the web-tool defaults are listed.

Species Tool Modified Parameters New Values
X. tropicalis BLASTN 2.2.5 expect 1.0e-01
ungapped alignment no
low complexity filter no
H. sapiens
P. troglodytes
M. musculus
R. norvegicus WU-BLAST 2.0 filter none
D. rerio RepeatMasker no
T. rubripes
C. elegans
C. briggsae
D. melanogaster
A. gambiae
T. nigroviridis NCBI-BLAST 2.2.6 expect 1.0e-01