Only parameters that have been changed from the web-tool defaults are listed.
| Species | Tool | Modified Parameters | New Values |
|---|---|---|---|
| X. tropicalis | BLASTN 2.2.5 | expect | 1.0e-01 |
| ungapped alignment | no | ||
| low complexity filter | no | ||
| H. sapiens | |||
| P. troglodytes | |||
| M. musculus | |||
| R. norvegicus | WU-BLAST 2.0 | filter | none |
| D. rerio | RepeatMasker | no | |
| T. rubripes | |||
| C. elegans | |||
| C. briggsae | |||
| D. melanogaster | |||
| A. gambiae | |||
| T. nigroviridis | NCBI-BLAST 2.2.6 | expect | 1.0e-01 |