Sequences of mir17 family members

[fasta format]

Alignment of Invertebrate mir92 sequences

[clustalw format]

z-score Tree of Invertebrate mir92

[PDF file]

Alignment scores of 5' and 3' arms of precursor miRNAs

[html file]

Blast parameters used in genome wide searches for mir17 family members

[html file]

Source and Location of mir17 family members

miRNA Length Location from to   Rfam name
Hs1-17 84 Chr_13 89700860 89700943 + hsa-mir-17
Hs1-18 71 Chr_13 89701006 89701076 + hsa-mir-18
Hs1-19a 82 Chr_13 89701146 89701227 + hsa-mir-19a
Hs1-20 71 Chr_13 89701320 89701390 + hsa-mir-20
Hs1-19b-1 87 Chr_13 89701447 89701533 + hsa-mir-19b-1
Hs1-92-1 78 Chr_13 89701569 89701646 + hsa-mir-92-1
HsX-106a 81 Chr_X 132009835 132009915 - hsa-mir-106a
Hsx-18 71 Chr_X 132009678 132009748 -
HsX-20 71 Chr_X 132009446 132009516 -
HsX-19b-2 95 Chr_X 132009308 132009402 - hsa-mir-19b-2
HsX-92-2 75 Chr_X 132009175 132009249 - hsa-mir-92-2
Hs3-106b 82 Chr_7 99303013 99303094 - hsa-mir-106b
Hs3-93 80 Chr_7 99302788 99302867 - hsa-mir-93
Hs3-25 84 Chr_7 99302580 99302663 - hsa-mir-25
Pt1-17 84 scaffold_32825 4082679 4082762 -
Pt1-18 71 scaffold_32825 4082546 4082616 -
Pt1-19a 82 scaffold_32825 4082394 4082475 -
Pt1-20 71 scaffold_32825 4082231 4082301 -
Pt1-19b-1 87 scaffold_32825 4082088 4082174 -
Pt1-92-1 72 scaffold_32825 4081982 4082053 -
PtX-106a 80 scaffold_37541 947087 947166 +
PtX-18 71 scaffold_37541 947254 947324 +
PtX-20 71 scaffold_37541 947485 947555 +
PtX-19b-2 96 scaffold_37541 947598 947693 +
Pt3-106b 82 scaffold_37686 198447 198528 +
Pt3-93 79 scaffold_37686 198675 198753 +
Pt3-25 84 scaffold_37686 198878 198961 +
Mm1-17 84 Chr_14 108095891 108095974 + mmu-mir-17
Mm1-18 96 Chr_14 108096071 108096166 + mmu-mir-18
Mm1-19a 82 Chr_14 108096220 108096301 + mmu-mir-19a
Mm1-20 107 Chr_14 108096377 108096483 + mmu-mir-20
Mm1-19b-1 87 Chr_14 108096525 108096611 + mmu-mir-19b-1
Mm1-92-1 80 Chr_14 108096647 108096726 + mmu-mir-92-1
MmX-106a 65 Chr_X 44043797 44043861 - mmu-mir-106a
Mmx-18 71 Chr_X 44043631 44043701 -
MmX-20 79 Chr_X 44043407 44043485 -
MmX-19b-2 84 Chr_X 44043277 44043360 - mmu-mir-19b-2
MmX-92-2 91 Chr_X 44043132 44043222 - mmu-mir-92-2
Mm3-106b 82 Chr_5 136637416 136637497 - mmu-mir-106b
Mm3-93 88 Chr_5 136637202 136637289 - mmu-mir-93
Mm3-25 84 Chr_5 136637000 136637083 - mmu-mir-25
Rn1-17 84 Chr_15 99869516 99869599 +
Rn1-18 71 Chr_15 99869663 99869733 +
Rn1-19a 82 Chr_15 99869799 99869880 +
Rn1-20 85 Chr_15 99869970 99870054 + rno-mir-20
Rn1-19b-1 87 Chr_15 99870101 99870187 +
Rn1-92-1 78 Chr_15 99870223 99870300 +
RnX-106a 80 Chr_X 139814876 139814955 -
RnX-18 71 Chr_X 139814718 139814788 -
RnX-20 79 Chr_X 139814500 139814578 -
RnX-19b-2 96 Chr_X 139814364 139814459 -
RnX-92-2 75 Chr_X 139814244 139814318 -
Rn3-106b 82 Chr_12 17597904 17597985 -
Rn3-93 87 Chr_12 17597695 17597781 -
Rn3-25 84 Chr_12 17597492 17597575 -
CcX-19b-2 85 G630P676210RF6.T0 552 636 -
CcX-92 80 G630P676210RF6.T0 419 498 -
Xt-17 87 AASO154739.x5 582 669 -
Xt-18 71 AASO154739.x5 533 462 -
Xt-19a 82 AASO154739.x5 311 393 -
Xt-20 72 AASO154739.x5 262 190 -
Xt-19b 88 AASO154739.x5 144 56 -
Xt-92 79 AFHY24138.b2 266 344 +
XtB-93 80 AFHY164698.b1 649 569 -
XtB-25 85 AFHY164698.b1 524 439 -
Dr14-18 69 Chr_14 24254950 24255018 -
Dr14-20 78 Chr_14 24254739 24254816 -
Dr14-19b 89 Chr_14 24254598 24254686 -
DrA-17 83 NA10065 13242 13324 -
DrA-18 71 NA10065 13138 13208 -
DrA-92 78 NA10065 12368 12445 -
DrB-17 86 NA16590 12891 12976 -
DrB-18 71 NA16590 12767 12837 -
DrB-19a 80 NA16590 12606 12685 -
DrB-19b 83 NA16590 12241 12323 -
DrB-92 78 NA16590 12122 12199 -
DrD-93 77 NA9509 14925 15001 -
DrD-19b 92 NA9509 14750 14841 -
DrD-25 84 NA9509 14653 14736 -
TrA-17 82 scaffold_588 95089 95170 +
TrA-18 69 scaffold_588 95367 95435 +
TrA-19a 80 scaffold_588 95492 95571 +
TrA-20 71 scaffold_588 95617 95687 +
TrA-19b 82 scaffold_588 95733 95814 +
TrA-92 74 scaffold_588 95844 95917 +
TrB-17 86 scaffold_2375 13219 13304 +
TrB-18 71 scaffold_2375 13354 13424 +
TrB-19a 82 scaffold_2375 13491 13572 +
TrB-19b 76 scaffold_2375 13831 13906 +
TrB-20 65 scaffold_2375 13710 13774 +
TrB-92 63 scaffold_2375 13998 14060 +
TrC-18 71 scaffold_354 31775 31845 -
TrC-19b 89 scaffold_354 31455 31543 -
TrD-17/106b 90 scaffold_2265 26655 26744 +
TrD-20/93 89 scaffold_2265 26815 26903 +
TrD-19b 92 scaffold_2265 27072 27151 +
TrD-25 83 scaffold_2265 27213 27295 +
TnA-17 83 FS_C~G_5991_1 121 203 +
TnA-18 72 FS_C~G_5991_1 391 462 +
TnA-19a 81 FS_C~G_5991_1 502 583 +
TnA-20 85 FS_C~G_5991_1 642 726 +
TnA-19b 87 FS_C~G_5991_1 763 849 +
TnA-92 78 FS_C~G_5991_1 874 951 +
TnB-17 84 FS_C~G_16982_1 2489 2572 +
TnB-18 71 FS_C~G_16982_1 2623 2693 +
TnB-19a 82 FS_C~G_16982_1 2757 2838 +
TnB-20 70 FS_C~G_16982_1 2964 3033 +
TnB-19b 85 FS_C~G_16982_1 3092 3176 +
TnB-92 78 FS_C~G_16982_1 3249 3326 +
TnC-18 71 FS_C~G_23571_1 803 873 +
TnC-19b 88 FS_C~G_23571_1 1188 1275 +
Dm-92a 95 Chr_3R 21461593 21461687 + dme-mir-92a
Dm-92b 100 Chr_3R 21466485 21466584 + dme-mir-92b
Ag-92a 96 Chr:2R 41107318 41107413 +
Ag-92b 100 Chr:2R 41126810 41126909 +
Ce-235 97 Chr_I 6170355 6170451 - cel-mir-235
Cb-235 104 cb25.fpc2888 1682747 1682850 -

Database Entries

Organism Location Access
Homo sapiens Chr_13 NCBI 34 15 Dec 2003
Homo sapiens Chr_X NCBI 34 15 Dec 2003
Homo sapiens Chr_7 NCBI 34 15 Dec 2003
Pan troglodytes scaffold_32825 BROAD 1 13 Nov 2003
Pan troglodytes scaffold_37541 BROAD 1 13 Nov 2003
Pan troglodytes scaffold_37686 BROAD 1 13 Nov 2003
Mus musculus Chr_14 NCBI m30 06 May 2003
Mus musculus Chr_X NCBI m30 06 May 2003
Mus musculus Chr_5 NCBI m30 06 May 2003
Rattus norvegicus Chr_15 RGSC 3.1 15 Dec 2003
Rattus norvegicus Chr_X RGSC 3.1 15 Dec 2003
Rattus norvegicus Chr_12 RGSC 3.1 15 Dec 2003
Canis Canis G630P676210RF6.T0 NCBI
Xenopus tropicalis AASO154739.x5 JGI Assembly v1.0 20 Dec 2003
Xenopus tropicalis AFHY24138.b2 JGI Assembly v1.0 20 Dec 2003
Xenopus tropicalis AFHY164698.b1 JGI Assembly v1.0 20 Dec 2003
Danio rerio Chr_14 WTSI Zv2 02 Jul 2003
Danio rerio NA10065 WTSI Zv2 02 Jul 2003
Danio rerio NA16590 WTSI Zv2 02 Jul 2003
Danio rerio NA9509 WTSI Zv2 02 Jul 2003
Takifugu rubripes scaffold_588 JGI Fugu assembly 3.0
Takifugu rubripes scaffold_2375 JGI Fugu assembly 3.0
Takifugu rubripes scaffold_354 JGI Fugu assembly 3.0
Takifugu rubripes scaffold_2265 JGI Fugu assembly 3.0
Tetraodon nigroviridisFS_CONTIG_5991_1 Genoscope assembly 1.0
Tetraodon nigroviridisFS_CONTIG_16982_1 Genoscope assembly 1.0
Tetraodon nigroviridisFS_CONTIG_23571_1 Genoscope assembly 1.0
Caenorhabditis elegans Chr_I WS 102 02 Jul 2003
Caenorhabditis brigsae cb25.agp8 02 Jul 2003
Drosophila melanogaster Chr_3R BGDP 3.1 02 Jul 2003
Anopheles gambiae MOZ 2 01 Oct 2003