Publications - Supplemental material

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BIOINF 09-021: Comparative Analysis of Eukaryotic U3 snoRNA

Manja Marz, Peter F. Stadler

For any questions please contact manja@bioinf.uni-leipzig.de

General Secondary Structure Model of U3 snoRNA

secstr.u3

Genome Sources And Overview Of Detected U3 SnoRNAs

allgenomes.pdf

Alignments (Stockholm format) and Sequences (Fasta format)


Group Alignment Sequence
Metazoa metazoans.U3.stk metazoans.U3.fa
Plants plants.U3.stk plants.U3.fa
Fungi fungi.U3.stk fungi.U3.fa
Other Eukayots others.U3.stk others.U3.fa
Questionable Candidates add-ons.stk add-ons.fa

Introns in fungi

Introns_Fungi_U3(.fa) fungi.u3

Selected Promotors



Organism Alignment PSE TATA
Anopheles gambiae aga.all.100up.aln Y N
Apis mellifera ame.all.100up.aln Y Y
Bombyx mori bmo.all.100up.aln Y N
Drosophila melanogaster dme.all.100up.aln Y weak YES
Caenorhabditis elegans cel.all.100up.aln Y N (for all pol III)
Caenorhabditis japonica cja.all.100up.aln Y N
Saccoglossus kowalevskii sko.all.100up.aln Y Y
Arabidopsis thaliana path.all.100up.aln Y Y
Oryzia sativa posa.all.100up.aln Y Y
Chlamydomonas reinhardii acre.all.100up.aln N N
Saccharomyces cerevisae fsce.all.100up.aln N N
Schizosaccharomyces pombe fspo.all.100up.aln ? Y